hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19032408/chunk_1/iprscan-20080502-19032408.nocrc
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Query sequence: KIAA2009
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.fs KH domain                                       84.9    3.3e-23   2
PF00013.19.ls KH domain                                       74.2    3.7e-19   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           18.1    4.9e-06   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           19.9     0.0013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00013.19.ls   1/2      16    59 ..     1    73 []    12.0    0.041
PF00013.19.fs   1/2      18    59 ..    19    73 .]    24.5  3.6e-06
PF00013.19.fs   2/2      94   153 ..     1    73 []    60.4  2.6e-16
PF00013.19.ls   2/2      94   153 ..     1    73 []    62.2  1.6e-15
PF00097.15.fs   1/1     450   489 ..     1    50 []    18.1  4.9e-06
PF00097.15.ls   1/1     450   489 ..     1    50 []    19.9   0.0013

Alignments of top-scoring domains:
PF00013.19.ls: domain 1 of 2, from 16 to 59: score 12.0, E = 0.041
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                       +                G +Ik++r +t++ I+ p  g      e+
    KIAA2009    16    FV----------------GCKIKALRAKTNTYIKTPVRG------EE 40   

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       +++++G +e+v+ A+++i   
    KIAA2009    41 P-------VFVVTGRKEDVAMARREI    59   

PF00013.19.fs: domain 1 of 2, from 18 to 59: score 24.5, E = 3.6e-06
                   *->GstIkeIreetGakIdipddgesknlpedplngsgertvtIsGtpea
                      G +Ik++r +t++ I+ p  g      e+p       +++++G +e+
    KIAA2009    18    GCKIKALRAKTNTYIKTPVRG------EEP-------VFVVTGRKED 51   

                   vekAkkli<-*
                   v+ A+++i   
    KIAA2009    52 VAMARREI    59   

PF00013.19.fs: domain 2 of 2, from 94 to 153: score 60.4, E = 2.6e-16
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vG++ G++G+tIk+I+++t + I  p+ +      ++
    KIAA2009    94    TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRD------KE 134  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       +++++G pe+v++A+++i   
    KIAA2009   135 P-------VFEVTGMPENVDRAREEI    153  

PF00013.19.ls: domain 2 of 2, from 94 to 153: score 62.2, E = 1.6e-15
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vG++ G++G+tIk+I+++t + I  p+ +      ++
    KIAA2009    94    TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRD------KE 134  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       +++++G pe+v++A+++i   
    KIAA2009   135 P-------VFEVTGMPENVDRAREEI    153  

PF00097.15.fs: domain 1 of 1, from 450 to 489: score 18.1, E = 4.9e-06
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C+e +  +      + pCgH     +fC +C  r  + + +  C
    KIAA2009   450    CSVCFESEVIAA-----LVPCGHN----LFCMECANRICE-KSEPEC 486  

                   plC<-*
                   p+C   
    KIAA2009   487 PVC    489  

PF00097.15.ls: domain 1 of 1, from 450 to 489: score 19.9, E = 0.0013
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C+e +  +      + pCgH     +fC +C  r  + + +  C
    KIAA2009   450    CSVCFESEVIAA-----LVPCGHN----LFCMECANRICE-KSEPEC 486  

                   plC<-*
                   p+C   
    KIAA2009   487 PVC    489  

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