# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj05611.fasta.huge -Q ../query/KIAA2009.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA2009, 501 aa vs ./tmplib.25089 library 1987004 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.2847+/-0.00925; mu= -3.2441+/- 0.629 mean_var=356.6219+/-84.400, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.067916 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA2031 ( 515 res) ef03841 ( 515) 955 107.0 3.2e-24 >>KIAA2031 ( 515 res) ef03841 (515 aa) initn: 1258 init1: 917 opt: 955 Z-score: 526.7 bits: 107.0 E(): 3.2e-24 Smith-Waterman score: 1363; 50.586% identity (68.555% similar) in 512 aa overlap (8-501:48-515) 10 20 30 KIAA20 WACLSLSPTPSS--APWFVG---CKIKALRAKTNTYI :.::: . .:: :::::::::::::: KIAA20 PAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYI 20 30 40 50 60 70 40 50 60 70 80 90 KIAA20 KTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNTALNGAVPGPPNLPGQ :::::::::::.:::::::: ::.:::.:::::::.:::.:.: .: ::. :::::::: KIAA20 KTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQ 80 90 100 110 120 130 100 110 120 130 140 150 KIAA20 TTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREE ::::::::::::::::::::::::::::.::::::::.::::::: :::::::::::::: KIAA20 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREE 140 150 160 170 180 190 160 170 180 190 200 210 KIAA20 IEAHIALRTGGIIELTDENDFHANGTDVGFDLHHGSGGSGPGSLWSKPTPSITPTPGRKP :::::.::::.. . ..::::::::: .:: :... :::.: ::. ::.: KIAA20 IEAHITLRTGAFTDAGPDSDFHANGTDVCLDLL---GAAA--SLWAK-----TPNQGRRP 200 210 220 230 240 220 230 240 250 260 KIAA20 FSS---YRNDSSSSLGSASTDSYFGGGTSSSAAATQRLADYSPPSPALSFAHNGNNNNNG .. :.:.. ::. :. : .:. .. .. . :.:: .. .:: KIAA20 PTATAGLRGDTA--LGAPSAPEAFYAGSRGGPSVPD-------PGPASPYSGSGN----- 250 260 270 280 290 270 280 290 300 310 320 KIAA20 NGYTYTA---GGEASVPSPDGCPELQPTFD--PAPAPPPGAPLIWAQFERSPGGGPAAPV .:... : :. ... .:: : .. :: :.: ::: :::. .: :. KIAA20 GGFAFGAEGPGAPVGTAAPDDC-DFGFDFDFLALDLTVPAAATIWAPFERA---APL-PA 300 310 320 330 340 330 340 350 360 370 380 KIAA20 SSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRLSPPLHM--AP- :.::. .. . :..:: :.: : : : . :: :: :: KIAA20 FSGCSTVNGAPGP------PAAGARRSSGA--GTPRHSPTLPEPGGLRLELPLSRRGAPD 350 360 370 380 390 400 390 400 410 420 430 KIAA20 --GAGEHHLARRVRSDPGGGGLAYAAYANGLGAQLPGLQPSDTSGSSSSSSSSSSSSSSS :: . . : :::.... :. . : . : : ::.: .: . :.::. KIAA20 PVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAA-AACAPLD-SGASENSRKPPSASSAP 410 420 430 440 450 440 450 460 470 480 490 KIAA20 SGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRI . .:.: :: :.::.:::::::::::::.:: ::: :::::::.:.: .::::.: KIAA20 AL-----ARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHI 460 470 480 490 500 510 500 KIAA20 FS :: KIAA20 FS 501 residues in 1 query sequences 1987004 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:25:25 2008 done: Thu Dec 18 15:25:25 2008 Total Scan time: 0.460 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]