# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ff02026.fasta.huge -Q ../query/KIAA2006.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA2006, 1367 aa
 vs ./tmplib.25089 library

1986138 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.8254+/-0.00571; mu= 14.8426+/- 0.389
 mean_var=131.6615+/-30.533, 0's: 0 Z-trim: 3  B-trim: 4 in 1/39
 Lambda= 0.111775

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1105  ( 730 res)   hh02687(revised)            ( 730)  637 114.9 5.3e-26


>>KIAA1105  ( 730 res)   hh02687(revised)                 (730 aa)
 initn: 483 init1: 256 opt: 637  Z-score: 558.7  bits: 114.9 E(): 5.3e-26
Smith-Waterman score: 637;  28.843% identity (62.998% similar) in 527 aa overlap (845-1358:12-529)

          820       830       840       850        860         870 
KIAA20 EDWGCSSWVPGMETSLPPGHWTAAVKKEEKCVPPYVQI-RDLHGILRTYA-NFSI-TKEL
                                     ::::   .  : . : :  . .... .. .
KIAA11                    IGMKSPEEQLVCVPPQEAFPNDPRVINRQRSSDYQFPSSPF
                                  10        20        30        40 

              880       890       900       910       920       930
KIAA20 KDTMR-TSHGLRRHPSFSANCGLPSSWTSTWQVADDLTQNTLDLEYLRFAHKLKQTIKNG
        ::.. :..      .   .: .:.. .    :..  :. :.  ::  :..:... .:. 
KIAA11 TDTLKGTTEDDVLTGQVEEQC-VPAAEAEPPAVSET-TERTVLGEYNLFSRKIEEILKQK
              50        60         70         80        90         

               940       950       960       970       980         
KIAA20 DSQH-SASSANVFPKESPTQISIGAFPSTKISEAPFLHPAPRSRSPLLVTVVESDPRPQG
       . .. :  :. .:  .   .  .. :  .: :.:   . .   .  : . ..... .  .
KIAA11 NVSYVSRVSTPIFSTQEKMK-RLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGN
     100       110        120       130       140       150        

     990      1000      1010      1020         1030       1040     
KIAA20 QPRRGYTASSLDSSSSWRERCSHNRDLRNSQRN--HTVS-FHLNKLK-YNSTVKESRNDI
        :  . . :.   .:.  ::  :   . .:. :  : .  .  . ::  ::  ..: . .
KIAA11 LPPVSPNDSGAKIASNPLER--HVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSAL
      160       170         180       190       200       210      

         1050      1060      1070      1080      1090      1100    
KIAA20 SLI-LNEYAEFNKVMKNSNQFIFQDKELNDVSGEATAQEMYLPFPGRSASYEDIIIDVCT
       . . .:.  . ...: .:....  :   . :  :.: .   . . .. :   ..: ..  
KIAA11 TEVEMNQPQHATELMVTSDHIVPGDMAREPVE-ETTKSPSDVNISAQPA-LSNFISQLEP
        220       230       240        250       260        270    

         1110      1120      1130      1140      1150      1160    
KIAA20 NLHVKLRSVVKEACKSTFLFYLVETEDKSFFVRTKNLLRKGGHTEIEPQHFCQAFHREND
       ..  .: ...:.. :.:  ::. : :.. .  . :. : : :.:: .:..: .  . . :
KIAA11 EVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLIKLGNTECHPEQFLER-RSKLD
          280       290       300       310       320        330   

         1170      1180      1190      1200      1210      1220    
KIAA20 TLIIIIRNEDISSHLHQIPSLLKLKHFPSVIFAGVDSPGDVLDHTYQELFRAGGFVISDD
        :.:::.::::.. .:.::.:. ::..: : ::::::  :: .:::.::: .:::..::.
KIAA11 KLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDE
           340       350       360       370       380       390   

           1230      1240       1250      1260      1270      1280 
KIAA20 KIL--EAVTLVQLKEIIKILEKLNG-NGRWKWLLHYRENKKLKEDERVDSTAHKKNIMLK
       .::  :.::. .::... .::.:.  .:.:.: .: . .:::::  :... : .   .:.
KIAA11 SILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLN
           400       410       420       430       440       450   

            1290      1300      1310      1320      1330      1340 
KIAA20 SFQSANIIELLHYHQCDSRSSTKAEILKCLLNLQIQHIDARFAVLLTDKPTIPREVFENN
        .:. ...:.: ::.:::.. .  : : ::. :: :.:. :  :.::.:       . .:
KIAA11 VYQKKHLVEILSYHNCDSQTRNAPE-LDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDN
           460       470        480       490       500       510  

            1350      1360                                         
KIAA20 GILVTDVNNFIENIEKIAAPFRSSYW                                  
       ::.:. ...:..:....                                           
KIAA11 GIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSALLENDEKDEEDMSLDSG
            520       530       540       550       560       570  




1367 residues in 1 query   sequences
1986138 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:25:18 2008 done: Thu Dec 18 15:25:19 2008
 Total Scan time:  0.810 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]