hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18545925/chunk_1/iprscan-20080502-18545925.nocrc
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Query sequence: KIAA2004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                28.6    8.9e-08   1
PF07647.7.fs SAM domain (Sterile alpha motif)                27.8    1.7e-07   1
PF00536.20.ls SAM domain (Sterile alpha motif)                27.7    3.8e-05   1
PF07647.7.ls SAM domain (Sterile alpha motif)                24.0    0.00049   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.fs   1/1      17    66 ..     1    54 [.    27.8  1.7e-07
PF07647.7.ls   1/1      17    83 ..     1    72 []    24.0  0.00049
PF00536.20.fs   1/1      18    70 ..     1    54 [.    28.6  8.9e-08
PF00536.20.ls   1/1      18    81 ..     1    65 []    27.7  3.8e-05

Alignments of top-scoring domains:
PF07647.7.fs: domain 1 of 1, from 17 to 66: score 27.8, E = 1.7e-07
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      ++ w+ e+v +WLes++ ++++++++++q + g  +l + l+ e+L 
    KIAA2004    17    TDDWTKEDVNQWLESHKIDQKHREILTEQDVNG-AVL-KWLKKEHL- 60   

                   klalGit<-*
                     ++Git   
    KIAA2004    61 V-DMGIT    66   

PF07647.7.ls: domain 1 of 1, from 17 to 83: score 24.0, E = 0.00049
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      ++ w+ e+v +WLes++ ++++++++++q + g  +l + l+ e+L 
    KIAA2004    17    TDDWTKEDVNQWLESHKIDQKHREILTEQDVNG-AVL-KWLKKEHL- 60   

                   klalGitsvghRkkilkkiqelkqq<-*
                     ++Git      +i   ++el+     
    KIAA2004    61 V-DMGITHGPA-IQIEELFKELRKT    83   

PF00536.20.fs: domain 1 of 1, from 18 to 70: score 28.6, E = 8.9e-08
                   *->dgwsfesVgeWLesigl.gqYidnFlsagyidgdtllqlteeDLedl
                      d w+ e+V +WLes + ++++++     + ++g  l  l++e L+d+
    KIAA2004    18    DDWTKEDVNQWLESHKIdQKHREIL-TEQDVNGAVLKWLKKEHLVDM 63   

                   GvtllGHr<-*
                   G+t+ G++   
    KIAA2004    64 GITH-GPA    70   

PF00536.20.ls: domain 1 of 1, from 18 to 81: score 27.7, E = 3.8e-05
                   *->dgwsfesVgeWLesigl.gqYidnFlsagyidgdtllqlteeDLedl
                      d w+ e+V +WLes + ++++++     + ++g  l  l++e L+d+
    KIAA2004    18    DDWTKEDVNQWLESHKIdQKHREIL-TEQDVNGAVLKWLKKEHLVDM 63   

                   GvtllGHrkKIlssIqgLk<-*
                   G+t+ G++  I    + L+   
    KIAA2004    64 GITH-GPAIQIEELFKELR    81   

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