hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18531682/chunk_1/iprscan-20080502-18531682.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2003 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 303.1 2e-86 10 SM00349 80.8 1.7e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 37 102 .. 1 62 [] 80.8 1.7e-19 SM00355 1/10 184 206 .. 1 23 [] 27.7 0.0016 SM00355 2/10 212 234 .. 1 23 [] 30.7 0.0002 SM00355 3/10 240 262 .. 1 23 [] 29.9 0.00035 SM00355 4/10 268 290 .. 1 23 [] 30.4 0.00025 SM00355 5/10 296 318 .. 1 23 [] 28.6 0.00087 SM00355 6/10 324 346 .. 1 23 [] 30.8 0.00018 SM00355 7/10 352 374 .. 1 23 [] 31.3 0.00013 SM00355 8/10 380 402 .. 1 23 [] 30.9 0.00017 SM00355 9/10 408 430 .. 1 23 [] 30.9 0.00018 SM00355 10/10 436 458 .. 1 23 [] 31.8 9.5e-05 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 37 to 102: score 80.8, E = 1.7e-19 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtFeDVAV Fs+EEW++LD aQr LYRdVMlEN L+SL+ + +k KIAA2003 37 VTFEDVAVHFSWEEWGLLDEAQRCLYRDVMLENLALLTSLD-VHRQK 82 p.....dliskLEqgeEpwi<-* ++ +++ + s + + + + KIAA2003 83 QhlgekHFRSNVGRALFVKT 102 SM00355: domain 1 of 10, from 184 to 206: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksfs +L+ H r H KIAA2003 184 YICSE-CGKSFSKSySLNDHWRLH 206 SM00355: domain 2 of 10, from 212 to 234: score 30.7, E = 0.0002 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf++ ++L++H rvH KIAA2003 212 YECRE-CGKSFRQSsSLIQHRRVH 234 SM00355: domain 3 of 10, from 240 to 262: score 29.9, E = 0.00035 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk fs+k++L++H rvH KIAA2003 240 HECDE-CGKLFSNKsNLIKHRRVH 262 SM00355: domain 4 of 10, from 268 to 290: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+++aL +H vH KIAA2003 268 YECSE-CGKSFSQRsALLQHRGVH 290 SM00355: domain 5 of 10, from 296 to 318: score 28.6, E = 0.00087 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ +++L++H++vH KIAA2003 296 YECSE-CGKFFTYHsSLIKHQKVH 318 SM00355: domain 6 of 10, from 324 to 346: score 30.8, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ ++L++H rvH KIAA2003 324 YECSE-CGKSFSQNsSLIEHHRVH 346 SM00355: domain 7 of 10, from 352 to 374: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksfs+++aL +H vH KIAA2003 352 YKCSE-CGKSFSQRsALLQHRGVH 374 SM00355: domain 8 of 10, from 380 to 402: score 30.9, E = 0.00017 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ ++L++H+rvH KIAA2003 380 YECSE-CGKFFPYSsSLRKHQRVH 402 SM00355: domain 9 of 10, from 408 to 430: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf++ + L++H rvH KIAA2003 408 YECSE-CGKSFTQNsGLIKHRRVH 430 SM00355: domain 10 of 10, from 436 to 458: score 31.8, E = 9.5e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ ++L++H+r+H KIAA2003 436 YECTE-CGKSFSHNsSLIKHQRIH 458 //