hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18531682/chunk_1/iprscan-20080502-18531682.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2003 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 355.1 1.1e-103 10 PF00096.16.fs Zinc finger, C2H2 type 335.4 9.1e-98 10 PF01352.17.fs KRAB box 91.3 2.6e-25 1 PF01352.17.ls KRAB box 93.3 6.9e-25 1 PF01286.9.fs XPA protein N-terminal 49.4 2.6e-13 10 PF01096.9.fs Transcription factor S-II (TFIIS) 42.1 2.5e-12 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 37 77 .. 1 41 [] 91.3 2.6e-25 PF01352.17.ls 1/1 37 77 .. 1 41 [] 93.3 6.9e-25 PF00096.16.ls 1/10 184 206 .. 1 24 [] 34.0 4.7e-07 PF00096.16.fs 1/10 184 206 .. 1 24 [] 32.1 9.7e-07 PF00096.16.fs 2/10 212 234 .. 1 24 [] 34.0 3.2e-07 PF00096.16.ls 2/10 212 234 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 3/10 240 262 .. 1 24 [] 32.9 5.9e-07 PF00096.16.ls 3/10 240 262 .. 1 24 [] 34.9 2.6e-07 PF00096.16.ls 4/10 268 290 .. 1 24 [] 33.1 9.1e-07 PF00096.16.fs 4/10 268 290 .. 1 24 [] 31.1 1.7e-06 PF00096.16.fs 5/10 296 318 .. 1 24 [] 31.8 1.1e-06 PF00096.16.ls 5/10 296 318 .. 1 24 [] 33.7 5.8e-07 PF00096.16.fs 6/10 324 346 .. 1 24 [] 34.5 2.4e-07 PF00096.16.ls 6/10 324 346 .. 1 24 [] 36.5 8.8e-08 PF00096.16.fs 7/10 352 374 .. 1 24 [] 31.5 1.4e-06 PF00096.16.ls 7/10 352 374 .. 1 24 [] 33.4 7.1e-07 PF00096.16.fs 8/10 380 402 .. 1 24 [] 34.1 3.1e-07 PF00096.16.ls 8/10 380 402 .. 1 24 [] 36.0 1.2e-07 PF00096.16.fs 9/10 408 430 .. 1 24 [] 35.8 1.1e-07 PF00096.16.ls 9/10 408 430 .. 1 24 [] 37.8 3.5e-08 PF00096.16.fs 10/10 436 458 .. 1 24 [] 37.7 3.7e-08 PF00096.16.ls 10/10 436 458 .. 1 24 [] 39.7 9.5e-09 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 37 to 77: score 91.3, E = 2.6e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+F++EEW+lLd+aQr+LYrdVMlEN L+Sl+ KIAA2003 37 VTFEDVAVHFSWEEWGLLDEAQRCLYRDVMLENLALLTSLD 77 PF01352.17.ls: domain 1 of 1, from 37 to 77: score 93.3, E = 6.9e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+F++EEW+lLd+aQr+LYrdVMlEN L+Sl+ KIAA2003 37 VTFEDVAVHFSWEEWGLLDEAQRCLYRDVMLENLALLTSLD 77 PF00096.16.ls: domain 1 of 10, from 184 to 206: score 34.0, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs +++L+ H+r H KIAA2003 184 YICS-ECGKSFSKSYSLNDHWRLH 206 PF00096.16.fs: domain 1 of 10, from 184 to 206: score 32.1, E = 9.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs +++L+ H+r H KIAA2003 184 YICS-ECGKSFSKSYSLNDHWRLH 206 PF00096.16.fs: domain 2 of 10, from 212 to 234: score 34.0, E = 3.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+++s+L +H+r+H KIAA2003 212 YECR-ECGKSFRQSSSLIQHRRVH 234 PF00096.16.ls: domain 2 of 10, from 212 to 234: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+++s+L +H+r+H KIAA2003 212 YECR-ECGKSFRQSSSLIQHRRVH 234 PF00096.16.fs: domain 3 of 10, from 240 to 262: score 32.9, E = 5.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk Fs+ksnL +H+r+H KIAA2003 240 HECD-ECGKLFSNKSNLIKHRRVH 262 PF00096.16.ls: domain 3 of 10, from 240 to 262: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk Fs+ksnL +H+r+H KIAA2003 240 HECD-ECGKLFSNKSNLIKHRRVH 262 PF00096.16.ls: domain 4 of 10, from 268 to 290: score 33.1, E = 9.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s L +H+ +H KIAA2003 268 YECS-ECGKSFSQRSALLQHRGVH 290 PF00096.16.fs: domain 4 of 10, from 268 to 290: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s L +H+ +H KIAA2003 268 YECS-ECGKSFSQRSALLQHRGVH 290 PF00096.16.fs: domain 5 of 10, from 296 to 318: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L +H+++H KIAA2003 296 YECS-ECGKFFTYHSSLIKHQKVH 318 PF00096.16.ls: domain 5 of 10, from 296 to 318: score 33.7, E = 5.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L +H+++H KIAA2003 296 YECS-ECGKFFTYHSSLIKHQKVH 318 PF00096.16.fs: domain 6 of 10, from 324 to 346: score 34.5, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s+L H r+H KIAA2003 324 YECS-ECGKSFSQNSSLIEHHRVH 346 PF00096.16.ls: domain 6 of 10, from 324 to 346: score 36.5, E = 8.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s+L H r+H KIAA2003 324 YECS-ECGKSFSQNSSLIEHHRVH 346 PF00096.16.fs: domain 7 of 10, from 352 to 374: score 31.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs++s L +H+ +H KIAA2003 352 YKCS-ECGKSFSQRSALLQHRGVH 374 PF00096.16.ls: domain 7 of 10, from 352 to 374: score 33.4, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs++s L +H+ +H KIAA2003 352 YKCS-ECGKSFSQRSALLQHRGVH 374 PF00096.16.fs: domain 8 of 10, from 380 to 402: score 34.1, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F +s+L++H+r+H KIAA2003 380 YECS-ECGKFFPYSSSLRKHQRVH 402 PF00096.16.ls: domain 8 of 10, from 380 to 402: score 36.0, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F +s+L++H+r+H KIAA2003 380 YECS-ECGKFFPYSSSLRKHQRVH 402 PF00096.16.fs: domain 9 of 10, from 408 to 430: score 35.8, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+++s L +H+r+H KIAA2003 408 YECS-ECGKSFTQNSGLIKHRRVH 430 PF00096.16.ls: domain 9 of 10, from 408 to 430: score 37.8, E = 3.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+++s L +H+r+H KIAA2003 408 YECS-ECGKSFTQNSGLIKHRRVH 430 PF00096.16.fs: domain 10 of 10, from 436 to 458: score 37.7, E = 3.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s+L +H+r+H KIAA2003 436 YECT-ECGKSFSHNSSLIKHQRIH 458 PF00096.16.ls: domain 10 of 10, from 436 to 458: score 39.7, E = 9.5e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s+L +H+r+H KIAA2003 436 YECT-ECGKSFSHNSSLIKHQRIH 458 //