hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18513809/chunk_1/iprscan-20080502-18513809.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA2002
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 -42.8    1.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1     362   684 ..     1   231 []   -42.8  1.6e-06

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 362 to 684: score -42.8, E = 1.6e-06
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik.............
                                     y a   k+    +A+K+ k++ +++++  ++ 
    KIAA2002   362    ---------------YTASYAKdPLNNYAVKICKskakesqqyyhsl 393  

                   ..................................................
                     +++   + + +++ ++   + +++  + ++++++++++++ ++++++ 
    KIAA2002   394 avrqslavhfniqqdcghflaevpnrllpwedpddpekdeddmeeteeda 443  

                   ...............erilrEik.iLkk..dHPNIVkLydvfeddklylV
                   +++++++++++ ++  + ++E +++++k+++   +V   +v        V
    KIAA2002   444 kgetdgknpkpcseaASSQKENQgVMSKkqRSHVVVITREVPC----LTV 489  

                   mEyceGdlGdLfdllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqg
                    +++     +L ++ k+         l E++++ ++ Q++s+Le+L   +
    KIAA2002   490 ADFVRD---SLAQHGKSPD-------LYErQVCLLLLQLCSGLEHLKPYH 529  

                   IiHRDLKPeNiLLds.......................hvKlaDFGlArq
                   + H+DL  eN+LL + +++++ ++ ++ +++++++ ++++ ++ F  A+q
    KIAA2002   530 VTHCDLRLENLLLVHyqpggtaqgfgpaepsptssyptRLIVSNFSQAKQ 579  

                   l.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkp
                    ++  +++     ++  +APE+++ ++Y   ++D    G+++yE+l    
    KIAA2002   580 KshlvdpeILRDQSR--LAPEIItatQYK--KCDEFQTGILIYEMLHLPN 625  

                   PFp..qldlifkkig............SpeakdLikklLvkdPekRlta.
                   PF+++ + +  +  + + ++ + ++++S+ + +L + lL+ +P++R+ ++
    KIAA2002   626 PFDenPELKEREYTRadlpripfrspySRGLQQLASCLLNPNPSERILIs 675  

                   eaLedeldikaHPff<-*
                   +a        + + +   
    KIAA2002   676 DAKG------ILQCL    684  

//