hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18513809/chunk_1/iprscan-20080502-18513809.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA2002
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00069.15.ls Protein kinase domain                          -66.7    0.00013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1     363   681 ..     1   287 []   -66.7  0.00013

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 363 to 681: score -66.7, E = 0.00013
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                   t   ak+  ++  +AvK i+k+k+k+++++++ +
    KIAA2002   363    -------------TASYAKDPLNN--YAVK-ICKSKAKESQQYYHSL 393  

                   l.................................................
                   + +++   + + +++ ++   + +++  + ++++++++++++ ++++++ 
    KIAA2002   394 Avrqslavhfniqqdcghflaevpnrllpwedpddpekdeddmeeteeda 443  

                   ............sEiqilkrLs.........HpNIvrlidvfedkdhlyl
                   +++++++++++ sE++  ++ +++  ++++++  +v +++v         
    KIAA2002   444 kgetdgknpkpcSEAASSQKENqgvmskkqrSHVVVITREVPC-----LT 488  

                   VlEycegGLrvldLfdylsetrrkgpll.fsedeakkialQilrgleYLH
                   V ++++      +L        ++g+  ++ e++++  +lQ+++gle+L 
    KIAA2002   489 VADFVRD-----SLA-------QHGKSPdLYERQVCLLLLQLCSGLEHLK 526  

                   sngiiHRDLKPeNILldnngvvda..................flKiaDFG
                      + H+DL +eN+Ll+ +++++ + ++ ++ +++++++ +++l ++ F 
    KIAA2002   527 PYHVTHCDLRLENLLLV-HYQPGGtaqgfgpaepsptssyptRLIVSNFS 575  

                   lAkkls......t.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlG
                    Ak++s+  ++++ ++++          +APE++  ++ y +k+D +  G
    KIAA2002   576 QAKQKShlvdpeIlRDQsR---------LAPEIIT-ATQY-KKCDEFQTG 614  

                   vilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewdsisrse
                   +++ye+l    PF++    ++l +++  r +l+ +++f sp++       
    KIAA2002   615 ILIYEMLHLPNPFDEN---PeLKEREYTRADLP-RIPFRSPYS------- 653  

                   frrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                           + +++L +++Ln++Ps+R+ + +++    +   
    KIAA2002   654 --------RGLQQLASCLLNPNPSERILISDAKGI--L    681  

//