hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18500127/chunk_1/iprscan-20080502-18500127.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2001 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03732.7.fs Retrotransposon gag protein 35.6 6.4e-10 1 PF03732.7.ls Retrotransposon gag protein 37.6 4.1e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03732.7.fs 1/1 309 402 .. 1 100 [] 35.6 6.4e-10 PF03732.7.ls 1/1 309 402 .. 1 100 [] 37.6 4.1e-08 Alignments of top-scoring domains: PF03732.7.fs: domain 1 of 1, from 309 to 402: score 35.6, E = 6.4e-10 *->klavhsLeGaAltWwkslvarsidaidsWdelkdaFlkrFvpsarkd ++ ++++G+A+ W+ s+ ++ ++ + d+ +k F +++ + KIAA2001 309 AFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPR 355 qleseLrqLrQkgtesvrEYverFkrlarqlphhggvrteealisaFlrG ++ +r L+Q g+ ++ Y + F+ la+ l +++ l+ Fl+G KIAA2001 356 VAKKAIRKLKQ-GHCTLGSYADAFQFLAQFLS-----WDDCRLQNQFLKG 399 Lre<-* L e KIAA2001 400 LSE 402 PF03732.7.ls: domain 1 of 1, from 309 to 402: score 37.6, E = 4.1e-08 *->klavhsLeGaAltWwkslvarsidaidsWdelkdaFlkrFvpsarkd ++ ++++G+A+ W+ s+ ++ ++ + d+ +k F +++ + KIAA2001 309 AFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPR 355 qleseLrqLrQkgtesvrEYverFkrlarqlphhggvrteealisaFlrG ++ +r L+Q g+ ++ Y + F+ la+ l +++ l+ Fl+G KIAA2001 356 VAKKAIRKLKQ-GHCTLGSYADAFQFLAQFLS-----WDDCRLQNQFLKG 399 Lre<-* L e KIAA2001 400 LSE 402 //