hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18482288/chunk_1/iprscan-20080502-18482288.nocrc
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Query sequence: KIAA2000
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                 172.0    5.7e-47   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/8     285   318 ..     1    34 []    10.9       29
SM00028    2/8     327   360 ..     1    34 []    24.2    0.018
SM00028    3/8     369   402 ..     1    34 []     9.3       45
SM00028    4/8     435   468 ..     1    34 []    21.6     0.11
SM00028    5/8     477   510 ..     1    34 []    28.3   0.0011
SM00028    6/8     519   552 ..     1    34 []    23.2    0.036
SM00028    7/8     561   594 ..     1    34 []    31.9  8.7e-05
SM00028    8/8     603   636 ..     1    34 []    22.7    0.052

Alignments of top-scoring domains:
SM00028: domain 1 of 8, from 285 to 318: score 10.9, E = 29
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ +  lG  +  lg + +Ai  ++++Le+ ++    
    KIAA2000   285    ADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETA    318  

SM00028: domain 2 of 8, from 327 to 360: score 24.2, E = 0.018
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l +l+ +y + +++  A++ y++ALe+ +n    
    KIAA2000   327    AQSLHQLASVYVQWKKFGNAEQLYKQALEISENA    360  

SM00028: domain 3 of 8, from 369 to 402: score 9.3, E = 45
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l  l+ +y k+++y++A+ + +k+ ++  +    
    KIAA2000   369    ARELEALATLYQKQNKYEQAEHFRKKSFKIHQKA    402  

SM00028: domain 4 of 8, from 435 to 468: score 21.6, E = 0.11
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a++l+ lG++y+++++++ A ++++++Le+ +     
    KIAA2000   435    ARTLNELGVLYYLQNNLETADQFLKRSLEMRERV    468  

SM00028: domain 5 of 8, from 477 to 510: score 28.3, E = 0.0011
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l+nl+ ++  +++yd+A+e ye+AL++ +     
    KIAA2000   477    AQSLNNLAALCNEKKQYDKAEELYERALDIRRRA    510  

SM00028: domain 6 of 8, from 519 to 552: score 23.2, E = 0.036
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a + + l+ +y k+g++d+A+  ye A+e+  +    
    KIAA2000   519    AYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKS    552  

SM00028: domain 7 of 8, from 561 to 594: score 31.9, E = 8.7e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a al nl+++y +++++ eA+  ye+AL++ ++    
    KIAA2000   561    ATALVNLAVLYSQMKKHVEALPLYERALKIYEDS    594  

SM00028: domain 8 of 8, from 603 to 636: score 22.7, E = 0.052
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e+l+nl+++ +  gd+++A e y++A+e+ +     
    KIAA2000   603    GETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAE    636  

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