hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18482288/chunk_1/iprscan-20080502-18482288.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2000 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00515.18.ls Tetratricopeptide repeat 167.7 2.8e-47 8 PF00515.18.fs Tetratricopeptide repeat 153.5 5.1e-43 8 PF07719.7.ls Tetratricopeptide repeat 145.6 1.2e-40 8 PF07719.7.fs Tetratricopeptide repeat 129.6 8.3e-36 8 PF07720.3.ls Tetratricopeptide repeat 43.8 5.3e-10 5 PF07720.3.fs Tetratricopeptide repeat 36.7 1.7e-09 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/8 285 318 .. 1 34 [] 9.7 0.35 PF07720.3.ls 1/5 327 360 .. 1 38 [] 7.8 1.1 PF00515.18.fs 2/8 327 360 .. 1 34 [] 19.7 0.00013 PF00515.18.ls 2/8 327 360 .. 1 34 [] 21.7 0.0024 PF00515.18.ls 3/8 369 402 .. 1 34 [] 8.4 0.5 PF00515.18.fs 3/8 369 391 .. 1 23 [. 8.3 0.24 PF00515.18.fs 4/8 435 468 .. 1 34 [] 18.0 0.00039 PF00515.18.ls 4/8 435 468 .. 1 34 [] 20.1 0.0076 PF00515.18.fs 5/8 477 510 .. 1 34 [] 26.8 1.3e-06 PF07720.3.ls 3/5 477 510 .. 1 38 [] 8.6 0.82 PF00515.18.ls 5/8 477 510 .. 1 34 [] 28.8 1.7e-05 PF07719.7.ls 5/8 477 510 .. 1 34 [] 20.8 0.0044 PF07720.3.ls 4/5 518 552 .. 1 38 [] 12.5 0.24 PF00515.18.ls 6/8 519 552 .. 1 34 [] 22.9 0.001 PF00515.18.fs 6/8 519 552 .. 1 34 [] 20.9 5.9e-05 PF00515.18.fs 7/8 561 594 .. 1 34 [] 34.5 8.3e-09 PF07719.7.fs 7/8 561 594 .. 1 34 [] 27.3 1.3e-06 PF07719.7.ls 7/8 561 594 .. 1 34 [] 29.3 1.2e-05 PF00515.18.ls 7/8 561 594 .. 1 34 [] 36.5 8.6e-08 PF00515.18.fs 8/8 603 636 .. 1 34 [] 17.5 0.00055 PF07719.7.ls 8/8 603 636 .. 1 34 [] 22.3 0.0016 PF07720.3.ls 5/5 603 636 .. 1 38 [] 10.9 0.41 PF00515.18.ls 8/8 603 636 .. 1 34 [] 19.5 0.011 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 8, from 285 to 318: score 9.7, E = 0.35 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ y lG + lg + +Ai +++ Le++++ KIAA2000 285 ADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETA 318 PF07720.3.ls: domain 1 of 5, from 327 to 360: score 7.8, E = 1.1 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* l+ l A v+ + +k+ Ae+l Y+++ ++ ++ KIAA2000 327 AQSLHQL--ASVYVQWKKFGNAEQL--YKQALEISENA 360 PF00515.18.fs: domain 2 of 8, from 327 to 360: score 19.7, E = 0.00013 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ + +l+ +y + +k+ A++ y++ALe+ +n KIAA2000 327 AQSLHQLASVYVQWKKFGNAEQLYKQALEISENA 360 PF00515.18.ls: domain 2 of 8, from 327 to 360: score 21.7, E = 0.0024 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ + +l+ +y + +k+ A++ y++ALe+ +n KIAA2000 327 AQSLHQLASVYVQWKKFGNAEQLYKQALEISENA 360 PF00515.18.ls: domain 3 of 8, from 369 to 402: score 8.4, E = 0.5 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ + l+ +y k++ky++A+ + +k ++ + KIAA2000 369 ARELEALATLYQKQNKYEQAEHFRKKSFKIHQKA 402 PF00515.18.fs: domain 3 of 8, from 369 to 391: score 8.3, E = 0.24 *->aeayynlGnaylklgkydeAiea<-* a+ + l+ +y k++ky++A+ + KIAA2000 369 ARELEALATLYQKQNKYEQAEHF 391 PF00515.18.fs: domain 4 of 8, from 435 to 468: score 18.0, E = 0.00039 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++++ lG++y+ +++++ A +++++ Le+++ KIAA2000 435 ARTLNELGVLYYLQNNLETADQFLKRSLEMRERV 468 PF00515.18.ls: domain 4 of 8, from 435 to 468: score 20.1, E = 0.0076 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++++ lG++y+ +++++ A +++++ Le+++ KIAA2000 435 ARTLNELGVLYYLQNNLETADQFLKRSLEMRERV 468 PF00515.18.fs: domain 5 of 8, from 477 to 510: score 26.8, E = 1.3e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl++++ ++++yd+A+e ye+AL++++ KIAA2000 477 AQSLNNLAALCNEKKQYDKAEELYERALDIRRRA 510 PF07720.3.ls: domain 3 of 5, from 477 to 510: score 8.6, E = 0.82 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* l l Aa + +k++y++Aeel Y+ + ++ KIAA2000 477 AQSLNNL--AALCNEKKQYDKAEEL--YERALDIRRRA 510 PF00515.18.ls: domain 5 of 8, from 477 to 510: score 28.8, E = 1.7e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl++++ ++++yd+A+e ye+AL++++ KIAA2000 477 AQSLNNLAALCNEKKQYDKAEELYERALDIRRRA 510 PF07719.7.ls: domain 5 of 8, from 477 to 510: score 20.8, E = 0.0044 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a l+nl+ ++ ++++y++A+e+ye+Al++ ++ KIAA2000 477 AQSLNNLAALCNEKKQYDKAEELYERALDIRRRA 510 PF07720.3.ls: domain 4 of 5, from 518 to 552: score 12.5, E = 0.24 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* l y ++ LA + +gk+++A+ l Y+l+ +++ + KIAA2000 518 LAYTVKH-LAILYKKMGKLDKAVPL--YELAVEIRQKS 552 PF00515.18.ls: domain 6 of 8, from 519 to 552: score 22.9, E = 0.001 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a + + l+ +y k+gk+d+A+ ye A+e++ + KIAA2000 519 AYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKS 552 PF00515.18.fs: domain 6 of 8, from 519 to 552: score 20.9, E = 5.9e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a + + l+ +y k+gk+d+A+ ye A+e++ + KIAA2000 519 AYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKS 552 PF00515.18.fs: domain 7 of 8, from 561 to 594: score 34.5, E = 8.3e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nl+++y +++k+ eA+ ye+AL++ ++ KIAA2000 561 ATALVNLAVLYSQMKKHVEALPLYERALKIYEDS 594 PF07719.7.fs: domain 7 of 8, from 561 to 594: score 27.3, E = 1.3e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a al nl+++y +++++ eAl +ye+Al+++++ KIAA2000 561 ATALVNLAVLYSQMKKHVEALPLYERALKIYEDS 594 PF07719.7.ls: domain 7 of 8, from 561 to 594: score 29.3, E = 1.2e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a al nl+++y +++++ eAl +ye+Al+++++ KIAA2000 561 ATALVNLAVLYSQMKKHVEALPLYERALKIYEDS 594 PF00515.18.ls: domain 7 of 8, from 561 to 594: score 36.5, E = 8.6e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nl+++y +++k+ eA+ ye+AL++ ++ KIAA2000 561 ATALVNLAVLYSQMKKHVEALPLYERALKIYEDS 594 PF00515.18.fs: domain 8 of 8, from 603 to 636: score 17.5, E = 0.00055 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* e+++nl+++ ++ g++++A e y++A e+ + KIAA2000 603 GETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAE 636 PF07719.7.ls: domain 8 of 8, from 603 to 636: score 22.3, E = 0.0016 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* e l nl+++ y+ gd+e+A+e+y++A e+ + KIAA2000 603 GETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAE 636 PF07720.3.ls: domain 5 of 5, from 603 to 636: score 10.9, E = 0.41 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* e l+ l A y+ g++++A+el Y+ + ++ + KIAA2000 603 GETLKNL--AVLSYEGGDFEKAAEL--YKRAMEIKEAE 636 PF00515.18.ls: domain 8 of 8, from 603 to 636: score 19.5, E = 0.011 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* e+++nl+++ ++ g++++A e y++A e+ + KIAA2000 603 GETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAE 636 //