# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bf00135.fasta.huge -Q ../query/KIAA2000.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA2000, 699 aa vs ./tmplib.25089 library 1986806 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.0990+/-0.00541; mu= 13.8650+/- 0.367 mean_var=104.7642+/-24.728, 0's: 0 Z-trim: 6 B-trim: 9 in 1/39 Lambda= 0.125305 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0664 ( 1134 res) hk02041 (1134) 239 54.6 5.7e-08 KIAA1785 ( 617 res) fh12727 ( 617) 181 43.8 5.6e-05 KIAA1043 ( 2126 res) af02720 (2126) 187 45.6 5.8e-05 KIAA0228 ( 681 res) ha04738 ( 681) 168 41.5 0.0003 >>KIAA0664 ( 1134 res) hk02041 (1134 aa) initn: 286 init1: 194 opt: 239 Z-score: 234.9 bits: 54.6 E(): 5.7e-08 Smith-Waterman score: 239; 23.827% identity (56.318% similar) in 277 aa overlap (356-627:768-1038) 330 340 350 360 370 380 KIAA20 VAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYGADH-P-YTARELEALATLYQKQN ..: .. . : : .: ... . . .. : KIAA06 ETVDQAVETYGLQKITLLREISLKTGIQVLLKEYSFDSRHKPAFTEEDVLNIFPVVKHVN 740 750 760 770 780 790 390 400 410 420 430 440 KIAA20 -KYEQAEHFRKKS-FKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNEL : .: :: ... :..: .:. : :. . ::.: . . : .. : : KIAA06 PKASDAFHFFQSGQAKVQQGFLKE-----GCELINE-ALNLFNNVYGAMHVETCACLRLL 800 810 820 830 840 850 450 460 470 480 490 500 KIAA20 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE . :.:.... : . .... : :::.: .::. : .:: : ..: . : : KIAA06 ARLHYIMGDYAEALSNQQKAVLMSERVMGTEHPNTIQEYMHLALYCFASSQLSTALSLLY 860 870 880 890 900 910 510 520 530 540 550 560 KIAA20 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVA :: . ... ::: .: ...... . . . : .. . : :. . : ::: .:: KIAA06 RARYLMLLVFGEDHPEMALLDNNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKALKVA 920 930 940 950 960 970 570 580 590 600 610 620 KIAA20 TALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEK . .: .: . . :: ... ::. .::. : .. :. . : :. .. ... KIAA06 LSHHLVARVYESKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQR 980 990 1000 1010 1020 1030 630 640 650 660 670 680 KIAA20 AA-ELYKRAMEIKEAETSLLGGKAPSRHSSSGDTFSLKTAHSPNVFLQQGQRKVQSNLLS . :.:. KIAA06 TMNEIYRNGSSANIPPLKFTAPSMASVLEQLNVINGILFIPLSQKDLENLKAEVARRHQL 1040 1050 1060 1070 1080 1090 >>KIAA1785 ( 617 res) fh12727 (617 aa) initn: 162 init1: 162 opt: 181 Z-score: 181.3 bits: 43.8 E(): 5.6e-05 Smith-Waterman score: 182; 26.380% identity (61.963% similar) in 163 aa overlap (416-574:244-393) 390 400 410 420 430 440 KIAA20 EQAEHFRKKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNELGVLY : ::.: :: :. : : ::.: KIAA17 GMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALEL----LGATFVDKKRDL--LGALK 220 230 240 250 260 450 460 470 480 490 500 KIAA20 YLQN--NLETADQ--FLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE : .. :.. .:. .... . . ... :. ..: ..: .: . .:. KIAA17 YWKKAMNMRYSDRTNIISKPVP-QTLIMAYDYAKEVNSAEELEGLIADP------DEMRM 270 280 290 300 310 320 510 520 530 540 550 560 KIAA20 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVA .:: ::.: :.:.::. .: ... . .: :.. . . :.. :....:... : : .: KIAA17 QALLIRERILGPSHPDTSYYIRYRGAVYADSGNFKRCINLWKYALDMQQSNLDPLSPMTA 330 340 350 360 370 380 570 580 590 600 610 620 KIAA20 TALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEK ..:...: :.: : KIAA17 SSLLSFAELFSFMLQDRAKGLLGTTVTFDDLMGILCKSVLEIERAIKQTQCPADPLQLNK 390 400 410 420 430 440 >>KIAA1043 ( 2126 res) af02720 (2126 aa) initn: 147 init1: 64 opt: 187 Z-score: 181.0 bits: 45.6 E(): 5.8e-05 Smith-Waterman score: 290; 24.242% identity (59.091% similar) in 330 aa overlap (330-644:2-321) 300 310 320 330 340 350 KIAA20 LLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISEN : ....::. : :: : ..: :.:... KIAA10 ELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 10 20 30 360 370 380 390 400 410 KIAA20 AYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRR-- ... :: :.. :. . ....: ... ... :. ..: .. ..: : . KIAA10 L--GNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAA 40 50 60 70 80 420 430 440 450 460 KIAA20 -------RALQLEELTLG-----KDTPDNARTLNELGVLYYLQNNLETADQFLKRSLEMR :: : .: :: :: ..:. ..::... .... .:: .. : : . KIAA10 RCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIA 90 100 110 120 130 140 470 480 490 500 510 520 KIAA20 ERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHL ... :. ... .:.. : .::.: . ... :.: .. :. : : : .: KIAA10 QEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNL 150 160 170 180 190 200 530 540 550 560 570 580 KIAA20 AILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYE :. :. .: :.:. :. ..: .. . : : :: ::. .. . ..:.: : :: KIAA10 AVAYQALGAHDRALQHYQNHLNIARELRDIQ--SEARALSNLGNFHCSRGEYVQAAPYYE 210 220 230 240 250 260 590 600 610 620 630 640 KIAA20 RALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEKAAELYKRAMEI-KEAETSLLGGKA . :.. : : :. . :.. .::. : :....:.. :.. . . :. . .: .:: KIAA10 QYLRLAPD-LQDMEGE-GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKA 270 280 290 300 310 320 650 660 670 680 690 KIAA20 PSRHSSSGDTFSLKTAHSPNVFLQQGQRKVQSNLLSPEGLSNICAQEKTTRFTSS KIAA10 YCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKF 330 340 350 360 370 380 >>KIAA0228 ( 681 res) ha04738 (681 aa) initn: 240 init1: 139 opt: 168 Z-score: 168.1 bits: 41.5 E(): 0.0003 Smith-Waterman score: 235; 25.194% identity (60.078% similar) in 258 aa overlap (285-537:384-628) 260 270 280 290 300 310 KIAA20 KDKSAMATEYFDSLKQYEKNCEGEDNMSCLADLYETLGRFLKDLGLLSQAIVPLQRSLEI .: : .: .. . :... : .:.: KIAA02 VKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDI 360 370 380 390 400 410 320 330 340 350 360 370 KIAA20 RETALDPDHPRVAQSLHQLA-SVYV-QWK--KFGNAEQLYKQALEISENAYGADHPYTAR :.... . .:: . ..:: : :: :.. :: :: ..:. : . :: : KIAA02 RQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPEDHLLLAS 420 430 440 450 460 470 380 390 400 410 420 430 KIAA20 ELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKD .. : . . : : ..: . .:. ... .:. .::: . ..:. KIAA02 SKRVKALILE-----EIAIDCHNK--ETEQRLLQEAHDLH------LSSLQLAKKAFGEF 480 490 500 510 520 440 450 460 470 480 KIAA20 TPDNARTLNELGVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCN-E . ..:. ..:: :: . ... :... ......:..:: . . : :...::.: : . KIAA02 NVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYD 530 540 550 560 570 580 490 500 510 520 530 540 KIAA20 KKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIR .::..::.:: :.. : .. .. . .: : . : ::...:. .: KIAA02 MNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWN 590 600 610 620 630 640 550 560 570 580 590 600 KIAA20 QKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNL KIAA02 RLRDRQYSVTDALEDVSTSPQSTEEVVQSFLISQNVEGPSC 650 660 670 680 699 residues in 1 query sequences 1986806 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:25:05 2008 done: Thu Dec 18 15:25:05 2008 Total Scan time: 0.550 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]