hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18400216/chunk_1/iprscan-20080502-18400216.nocrc
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Query sequence: KIAA1995
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 266.3    2.4e-75   1
SM00219                                                  28.6    6.6e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      84   340 ..     1   280 []    28.6  6.6e-13
SM00220    1/1      84   340 ..     1   231 []   266.3  2.4e-75

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 84 to 340: score 28.6, E = 6.6e-13
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda.....kee
                         +++LG+GaFGe   +tl+++++++  V  K +     +++++++
    KIAA1995    84    YIPIRVLGRGAFGE---ATLYrrteddSLVVWKEVDLTRlsekeRRD 127  

                   FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL
                    l+E+ i+  l  +H+Ni++ +   ++          l+i +Ey+ gG+L
    KIAA1995   128 ALNEIVILALL--QHDNIIAYYNHFMDN-------TTLLIELEYCNGGNL 168  

                   .ldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvge
                    ++ Lr + + +  +  + + +QI +  + +++ ++ HRD+ + N+ +++
    KIAA1995   169 yDKILRQKDKLFEEEMVVWYLFQIVSAVSCIHKAGILHRDIKTLNIFLTK 218  

                   nkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl
                    + +K +D GL+++l ++         Y++     +  +     m+PE  
    KIAA1995   219 ANLIKLGDYGLAKKLNSE---------YSM----AETLVGTPYYMSPELC 255  

                   kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy
                   +  k+++kSD+W+ G +++E++tl  +          ++  +  ++ +G 
    KIAA1995   256 QGVKYNFKSDIWAVGCVIFELLTLKRTFDA------TNPLNLCVKIVQGI 299  

                   RlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                   R +  ++         + el ++  +C + dPe+RPt  el ++ +l   
    KIAA1995   300 RAMEVDS------SQYSLELIQMVHSCLDQDPEQRPTADELldRPLL    340  

SM00220: domain 1 of 1, from 84 to 340: score 266.3, E = 2.4e-75
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y  +++lG+GaFG+  l r ++++ lv  K+++ ++ ++++++++l+
    KIAA1995    84    YIPIRVLGRGAFGEATLYRRTEDDSLVVWKEVDltrlsekerRDALN 130  

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   Ei iL   +H+NI+ +y +f d++ l + +Eyc+G  G+L+d + +++  
    KIAA1995   131 EIVILALlQHDNIIAYYNHFMDnTTLLIELEYCNG--GNLYDKILRQKD- 177  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                      k + E+++  y+ Qi+sa+  +H+ gI+HRD+K  Ni+L++ + +Kl
    KIAA1995   178 ---KLFEEeMVVWYLFQIVSAVSCIHKAGILHRDIKTLNIFLTKanLIKL 224  

                   aDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil
                   +D GlA++l+++ +   t+vGTp+Ym+PE++++ +Y++ ++DiW++Gc++
    KIAA1995   225 GDYGLAKKLnseysmaETLVGTPYYMSPELCqgvKYNF-KSDIWAVGCVI 273  

                   yElltGkpPFp..qldlifkkig.............SpeakdLikklLvk
                   +Ellt k  F+ +++  +  ki+ + +  + +++ +S e+++++  +L+ 
    KIAA1995   274 FELLTLKRTFDatNPLNLCVKIVqgiramevdssqySLELIQMVHSCLDQ 323  

                   dPekRlta.eaLedeldikaHPff<-*
                   dPe+R+ta+e+L         P +   
    KIAA1995   324 DPEQRPTAdELLD-------RPLL    340  

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