hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18400216/chunk_1/iprscan-20080502-18400216.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1995 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 236.0 7.3e-68 1 PF00069.15.fs Protein kinase domain 234.1 2.7e-67 1 PF00415.9.fs Regulator of chromosome condensation (RCC 81.6 7e-23 6 PF00415.9.ls Regulator of chromosome condensation (RCC 81.1 3.1e-21 4 PF07714.7.fs Protein tyrosine kinase 67.7 1.5e-19 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 84 340 .. 1 287 [] 234.1 2.7e-67 PF00069.15.ls 1/1 84 340 .. 1 287 [] 236.0 7.3e-68 PF07714.7.fs 2/3 121 279 .. 42 212 .. 59.8 2.9e-17 PF00415.9.ls 2/4 476 527 .. 1 68 [] 27.1 5.7e-05 PF00415.9.fs 2/6 476 527 .. 1 68 [] 25.4 1.1e-06 PF00415.9.ls 3/4 532 579 .. 1 68 [] 25.4 0.00019 PF00415.9.fs 3/6 532 579 .. 1 68 [] 24.7 1.8e-06 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 84 to 340: score 234.1, E = 2.7e-67 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y +++lG+G+fG+ + ++ + +V+ K++++ + ++k+++ a++ KIAA1995 84 YIPIRVLGRGAFGEATLYRRTEDDSLVVWKEVDLTRLSEKERRDALN 130 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei il+ L+H+NI+ ++ f+d++ l + lEyc+gG L+d + KIAA1995 131 --EIVILALLQHDNIIAYYNHFMDNTTLLIELEYCNGG----NLYDKIL- 173 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv r+k +l f+e+ + ++ Qi++++ +H+ gi+HRD+K NI+l + + KIAA1995 174 -RQKDKL-FEEEMVVWYLFQIVSAVSCIHKAGILHRDIKTLNIFLTKANL 221 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++D GlAkkl ++ +s + t+vGTp+Ym+PE+++ g +y k+D KIAA1995 222 I----KLGDYGLAKKL-NsEYSmAETLVGTPYYMSPELCQ-GVKYNFKSD 265 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +W++G++++ellt k F+ ++l+ ++i++ + e ds + + KIAA1995 266 IWAVGCVIFELLTLKRTFDAT---NpLNLCVKIVQGIR-AMEVDSSQYS- 310 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* e+++ + +cL++DP++R+ta+e+l P + KIAA1995 311 -------------LELIQMVHSCLDQDPEQRPTADELLDRPLL 340 PF00069.15.ls: domain 1 of 1, from 84 to 340: score 236.0, E = 7.3e-68 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y +++lG+G+fG+ + ++ + +V+ K++++ + ++k+++ a++ KIAA1995 84 YIPIRVLGRGAFGEATLYRRTEDDSLVVWKEVDLTRLSEKERRDALN 130 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei il+ L+H+NI+ ++ f+d++ l + lEyc+gG L+d + KIAA1995 131 --EIVILALLQHDNIIAYYNHFMDNTTLLIELEYCNGG----NLYDKIL- 173 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv r+k +l f+e+ + ++ Qi++++ +H+ gi+HRD+K NI+l + + KIAA1995 174 -RQKDKL-FEEEMVVWYLFQIVSAVSCIHKAGILHRDIKTLNIFLTKANL 221 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++D GlAkkl ++ +s + t+vGTp+Ym+PE+++ g +y k+D KIAA1995 222 I----KLGDYGLAKKL-NsEYSmAETLVGTPYYMSPELCQ-GVKYNFKSD 265 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +W++G++++ellt k F+ ++l+ ++i++ + e ds + + KIAA1995 266 IWAVGCVIFELLTLKRTFDAT---NpLNLCVKIVQGIR-AMEVDSSQYS- 310 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* e+++ + +cL++DP++R+ta+e+l P + KIAA1995 311 -------------LELIQMVHSCLDQDPEQRPTADELLDRPLL 340 PF07714.7.fs: domain 2 of 3, from 121 to 279: score 59.8, E = 2.9e-17 *->seeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiV se+e r+d l+E+ i+ l +H+Ni+ ++ ++ l+i KIAA1995 121 SEKE--RRDALNEIVILALL-QHDNIIAYYNHFMD-NTT----LLIE 159 tEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRD +Ey+ gG+L+d ++ ++ + ++ + + +Qi ++ + + ++ HRD KIAA1995 160 LEYCNGGNLYDKILRQ-KDKLFEEEMVVWYLFQIVSAVSCIHKAGILHRD 208 LAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEsl + + N+ +++ + +K +D GLa+ + ++Y + + m+PE KIAA1995 209 IKTLNIFLTKANLIKLGDYGLAKKL--NSEY-SMAETLVGTPYYMSPELC 255 kygkFtskSDVWSFGVlLWEiftl<-* + k++ kSD+W+ G++++E++tl KIAA1995 256 QGVKYNFKSDIWAVGCVIFELLTL 279 PF00415.9.ls: domain 2 of 4, from 476 to 527: score 27.1, E = 5.7e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G++Y++G+ + +G G + + l P ++ KIAA1995 476 EGQLYAFGS--DYYGCMGVDKVAGPEV---------LEPMQL----- 506 ssslsekVvsvasGgqHtval<-* + ls +V +v++G+ H v+l KIAA1995 507 NFFLSNPVEQVSCGDNHVVVL 527 PF00415.9.fs: domain 2 of 6, from 476 to 527: score 25.4, E = 1.1e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G++Y++G+ + +G G + + l P ++ KIAA1995 476 EGQLYAFGS--DYYGCMGVDKVAGPEV---------LEPMQL----- 506 ssslsekVvsvasGgqHtval<-* + ls +V +v++G+ H v+l KIAA1995 507 NFFLSNPVEQVSCGDNHVVVL 527 PF00415.9.ls: domain 3 of 4, from 532 to 579: score 25.4, E = 0.00019 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr VYs+Gc ge+G+LGl+ e++ P++v KIAA1995 532 --EVYSWGC--GEYGRLGLDSEEDYY-----------TPQKV----- 558 ssslsekVvsvasGgqHtval<-* v v +G + t++l KIAA1995 559 DVPKALIIVAVQCGCDGTFLL 579 PF00415.9.fs: domain 3 of 6, from 532 to 579: score 24.7, E = 1.8e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr VYs+Gc ge+G+LGl+ e++ P++v KIAA1995 532 --EVYSWGC--GEYGRLGLDSEEDYY-----------TPQKV----- 558 ssslsekVvsvasGgqHtval<-* v v +G + t++l KIAA1995 559 DVPKALIIVAVQCGCDGTFLL 579 //