hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18364190/chunk_1/iprscan-20080502-18364190.nocrc
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Query sequence: KIAA1993
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                  89.7    3.5e-22   1
SM00355                                                  87.0    2.2e-21   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      64   158 ..     1   114 []    89.7  3.5e-22
SM00355      1/3     404   426 ..     1    23 []    31.4  0.00013
SM00355      2/3     432   454 ..     1    23 []    28.0   0.0013
SM00355      3/3     460   483 ..     1    23 []    27.7   0.0016

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 64 to 158: score 89.7, E = 3.5e-22
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD++++++g         + f+a  HkavLaa+   SpyF++    +
    KIAA1993    64    CDIIVHIQG---------QPFRA--HKAVLAAS---SPYFRDHSALs 96   

                   ......ieldDeallievspeaFralLnflYt.kldlpeedvenveelLe
                   + ++ +i ++        +p +F+ lL+f+Yt++ +l  +   +v ++L 
    KIAA1993    97 tmsglsISVIK-------NPNVFEQLLSFCYTgRMSLQLK---DVVSFLT 136  

                   lAdfldSYGqip.lvelCeefllknl<-*
                   +A+fl    q++ ++++C+++l++     
    KIAA1993   137 AASFL----QMQcVIDKCTQILESIH    158  

SM00355: domain 1 of 3, from 404 to 426: score 31.4, E = 0.00013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgksf++k++L rHmr H   
    KIAA1993   404    LICIY-CGKSFNQKgSLDRHMRLH    426  

SM00355: domain 2 of 3, from 432 to 454: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk++++k++L+ H+r H   
    KIAA1993   432    FVCKF-CGKKYTRKdQLEYHIRGH    454  

SM00355: domain 3 of 3, from 460 to 483: score 27.7, E = 0.0016
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C+i Cgk+f+ ++ L++H+r+ H   
    KIAA1993   460    FRCEI-CGKCFPFQgTLNQHLRkNH    483  

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