hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18364190/chunk_1/iprscan-20080502-18364190.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1993
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.ls BTB/POZ domain                                 119.7    7.8e-33   1
PF00651.21.fs BTB/POZ domain                                 117.9    2.1e-32   1
PF00096.16.ls Zinc finger, C2H2 type                          92.2    1.5e-24   3
PF00096.16.fs Zinc finger, C2H2 type                          86.2      9e-23   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      54   158 ..     1   135 []   117.9  2.1e-32
PF00651.21.ls   1/1      54   158 ..     1   135 []   119.7  7.8e-33
PF00096.16.ls   1/3     404   426 ..     1    24 []    27.4  4.7e-05
PF00096.16.fs   1/3     404   426 ..     1    24 []    25.4  4.4e-05
PF00096.16.fs   2/3     432   454 ..     1    24 []    30.4  2.6e-06
PF00096.16.ls   2/3     432   454 ..     1    24 []    32.3  1.5e-06
PF00096.16.ls   3/3     460   483 ..     1    24 []    32.5  1.4e-06
PF00096.16.fs   3/3     460   483 ..     1    24 []    30.5  2.4e-06

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 54 to 158: score 117.9, E = 2.1e-32
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lnelr+qg+lcD++++++        g+ f+AHKavLaa+SpYF++ 
    KIAA1993    54    LNELRLQGKLCDIIVHIQ--------GQPFRAHKAVLAASSPYFRDH 92   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                            t++  s+s +i     +p +fe+lL+f+Ytg+ s+      
    KIAA1993    93 SALS-----TMSGLSIS-VIK----NPNVFEQLLSFCYTGRMSLQ----- 127  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         +++v+++L aA ++lq+++++d+C++ l  +    
    KIAA1993   128 ------LKDVVSFLTAA-SFLQMQCVIDKCTQILESIH    158  

PF00651.21.ls: domain 1 of 1, from 54 to 158: score 119.7, E = 7.8e-33
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lnelr+qg+lcD++++++        g+ f+AHKavLaa+SpYF++ 
    KIAA1993    54    LNELRLQGKLCDIIVHIQ--------GQPFRAHKAVLAASSPYFRDH 92   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                            t++  s+s +i     +p +fe+lL+f+Ytg+ s+      
    KIAA1993    93 SALS-----TMSGLSIS-VIK----NPNVFEQLLSFCYTGRMSLQ----- 127  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         +++v+++L aA ++lq+++++d+C++ l  +    
    KIAA1993   128 ------LKDVVSFLTAA-SFLQMQCVIDKCTQILESIH    158  

PF00096.16.ls: domain 1 of 3, from 404 to 426: score 27.4, E = 4.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C  +CgksF++k++L rH+r H   
    KIAA1993   404    LICI-YCGKSFNQKGSLDRHMRLH    426  

PF00096.16.fs: domain 1 of 3, from 404 to 426: score 25.4, E = 4.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C  +CgksF++k++L rH+r H   
    KIAA1993   404    LICI-YCGKSFNQKGSLDRHMRLH    426  

PF00096.16.fs: domain 2 of 3, from 432 to 454: score 30.4, E = 2.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cgk+++rk++L+ H+r H   
    KIAA1993   432    FVCK-FCGKKYTRKDQLEYHIRGH    454  

PF00096.16.ls: domain 2 of 3, from 432 to 454: score 32.3, E = 1.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cgk+++rk++L+ H+r H   
    KIAA1993   432    FVCK-FCGKKYTRKDQLEYHIRGH    454  

PF00096.16.ls: domain 3 of 3, from 460 to 483: score 32.5, E = 1.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +Cgk+F  +++L++Hlr++H   
    KIAA1993   460    FRCE-ICGKCFPFQGTLNQHLRKnH    483  

PF00096.16.fs: domain 3 of 3, from 460 to 483: score 30.5, E = 2.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +Cgk+F  +++L++Hlr++H   
    KIAA1993   460    FRCE-ICGKCFPFQGTLNQHLRKnH    483  

//