hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18350182/chunk_1/iprscan-20080502-18350182.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1992 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07719.7.ls Tetratricopeptide repeat 188.2 1.8e-53 15 PF07719.7.fs Tetratricopeptide repeat 170.2 4.7e-48 15 PF00515.18.fs Tetratricopeptide repeat 129.3 8.8e-36 13 PF00515.18.ls Tetratricopeptide repeat 129.4 9.3e-36 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/10 29 62 .. 1 34 [] 8.1 0.53 PF00515.18.fs 4/13 259 292 .. 1 34 [] 27.9 6e-07 PF00515.18.ls 3/10 259 292 .. 1 34 [] 29.9 8.1e-06 PF07719.7.fs 5/15 259 292 .. 1 34 [] 25.3 4.7e-06 PF07719.7.ls 4/15 259 292 .. 1 34 [] 27.3 5.1e-05 PF00515.18.ls 4/10 293 326 .. 1 34 [] 12.8 0.15 PF00515.18.fs 5/13 299 326 .. 7 34 .] 11.3 0.033 PF00515.18.fs 7/13 368 401 .. 1 34 [] 10.6 0.051 PF00515.18.ls 6/10 368 401 .. 1 34 [] 12.6 0.15 PF07719.7.ls 8/15 421 454 .. 1 34 [] 23.5 0.00072 PF00515.18.ls 7/10 421 454 .. 1 34 [] 18.9 0.017 PF00515.18.fs 8/13 421 454 .. 1 34 [] 16.9 0.00086 PF00515.18.ls 8/10 489 522 .. 1 34 [] 8.9 0.43 PF07719.7.ls 10/15 489 522 .. 1 34 [] 21.4 0.0031 PF00515.18.fs 9/13 500 522 .. 12 34 .] 9.9 0.084 PF00515.18.fs 12/13 734 767 .. 1 34 [] 17.3 0.00066 PF00515.18.ls 9/10 734 767 .. 1 34 [] 19.3 0.013 PF00515.18.ls 10/10 803 836 .. 1 34 [] 8.7 0.46 PF00515.18.fs 13/13 807 836 .. 5 34 .] 7.7 0.34 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 10, from 29 to 62: score 8.1, E = 0.53 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ + ++ + + g+ ++A ++ +Le++P++ KIAA1992 29 LQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSY 62 PF00515.18.fs: domain 4 of 13, from 259 to 292: score 27.9, E = 6e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ + lG ay++ +++eAi aye+AL +P++ KIAA1992 259 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 292 PF00515.18.ls: domain 3 of 10, from 259 to 292: score 29.9, E = 8.1e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ + lG ay++ +++eAi aye+AL +P++ KIAA1992 259 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 292 PF07719.7.fs: domain 5 of 15, from 259 to 292: score 25.3, E = 4.7e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++ +lG+ay++ ++eeA+ aye+Al +P++ KIAA1992 259 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 292 PF07719.7.ls: domain 4 of 15, from 259 to 292: score 27.3, E = 5.1e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++ +lG+ay++ ++eeA+ aye+Al +P++ KIAA1992 259 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 292 PF00515.18.ls: domain 4 of 10, from 293 to 326: score 12.8, E = 0.15 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +G a+ k +y Ai +ye AL+ +n KIAA1992 293 GTLASKMGKALIKTHNYSMAITYYEAALKTGQKN 326 PF00515.18.fs: domain 5 of 13, from 299 to 326: score 11.3, E = 0.033 *->lGnaylklgkydeAieayekALeldPnn<-* +G a+ k +y Ai +ye AL+ +n KIAA1992 299 MGKALIKTHNYSMAITYYEAALKTGQKN 326 PF00515.18.fs: domain 7 of 13, from 368 to 401: score 10.6, E = 0.051 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ l+ +y k++k+ +Ai a+++A el+ KIAA1992 368 GRCQVLLAKVYSKMEKLGDAITALQQARELQARV 401 PF00515.18.ls: domain 6 of 10, from 368 to 401: score 12.6, E = 0.15 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ l+ +y k++k+ +Ai a+++A el+ KIAA1992 368 GRCQVLLAKVYSKMEKLGDAITALQQARELQARV 401 PF07719.7.ls: domain 8 of 15, from 421 to 454: score 23.5, E = 0.00072 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae++ +++ +++dye+A+++y++Al +++ KIAA1992 421 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETD 454 PF00515.18.ls: domain 7 of 10, from 421 to 454: score 18.9, E = 0.017 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae++ ++ ++ +y++Ai++y++AL + +++ KIAA1992 421 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETD 454 PF00515.18.fs: domain 8 of 13, from 421 to 454: score 16.9, E = 0.00086 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae++ ++ ++ +y++Ai++y++AL + +++ KIAA1992 421 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETD 454 PF00515.18.ls: domain 8 of 10, from 489 to 522: score 8.9, E = 0.43 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a ++ + +++++y++A+ ++++ Le P+n KIAA1992 489 EAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN 522 PF07719.7.ls: domain 10 of 15, from 489 to 522: score 21.4, E = 0.0031 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a ++++++ ++++dye+A+ ++++ le P+n KIAA1992 489 EAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN 522 PF00515.18.fs: domain 9 of 13, from 500 to 522: score 9.9, E = 0.084 *->lklgkydeAieayekALeldPnn<-* +++++y++A+ ++++ Le P+n KIAA1992 500 FRKQDYEQAVFHLQQLLERKPDN 522 PF00515.18.fs: domain 12 of 13, from 734 to 767: score 17.3, E = 0.00066 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + l+ +y + kyd A++ ++++L++++++ KIAA1992 734 EKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSC 767 PF00515.18.ls: domain 9 of 10, from 734 to 767: score 19.3, E = 0.013 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + l+ +y + kyd A++ ++++L++++++ KIAA1992 734 EKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSC 767 PF00515.18.ls: domain 10 of 10, from 803 to 836: score 8.7, E = 0.46 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + y l+ ylk ++y + i+ + ++Le P++ KIAA1992 803 PAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 836 PF00515.18.fs: domain 13 of 13, from 807 to 836: score 7.7, E = 0.34 *->ynlGnaylklgkydeAieayekALeldPnn<-* y l+ ylk ++y + i+ + ++Le P++ KIAA1992 807 YKLAFNYLKAKRYVDSIDICHQVLEAHPTY 836 //