hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18314427/chunk_1/iprscan-20080502-18314427.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1990 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01571.11.fs Aminomethyltransferase folate-binding domain 303.8 1e-95 1 PF01266.14.ls FAD dependent oxidoreductase 315.5 9.1e-92 1 PF01266.14.fs FAD dependent oxidoreductase 313.6 3.3e-91 1 PF01571.11.ls Aminomethyltransferase folate-binding domain 305.7 7.6e-89 1 PF08669.1.fs Glycine cleavage T-protein C-terminal barrel 128.1 1.2e-37 1 PF08669.1.ls Glycine cleavage T-protein C-terminal barrel 130.0 5.9e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01266.14.fs 1/1 48 406 .. 1 402 [] 313.6 3.3e-91 PF01266.14.ls 1/1 48 406 .. 1 402 [] 315.5 9.1e-92 PF01571.11.fs 1/1 527 744 .. 1 228 [] 303.8 1e-95 PF01571.11.ls 1/1 527 744 .. 1 228 [] 305.7 7.6e-89 PF08669.1.fs 1/1 751 860 .. 1 102 [] 128.1 1.2e-37 PF08669.1.ls 1/1 751 860 .. 1 102 [] 130.0 5.9e-36 Alignments of top-scoring domains: PF01266.14.fs: domain 1 of 1, from 48 to 406: score 313.6, E = 3.3e-91 *->DVvVIGGGivGlstAyhLakrGl.sVtllErgdigsGaSgrnaGlih Vv+ GGGi+G s+AyhL+k G+++++llE+g++++G++ aG+++ KIAA1990 48 QVVICGGGITGTSVAYHLSKMGWkDIVLLEQGRLAAGSTRFCAGILS 94 pglryleqgrWllldlvreagkera.llarla.esrdllreleleelgid + + ++++a++s++l+ +l ++e+gi+ KIAA1990 95 TA--------------------RHLtIEQKMAdYSNKLYYQL-EQETGIQ 123 cdfrrtGglylardeaeld.lerlaaalralGlpedvelLdaeelreleP +++ rtG+++la ++++l +l+r+ a l+ G+ ++e+++++ ++el KIAA1990 124 TGYTRTGSIFLAQTQDRLIsLKRINAGLNVIGI--PSEIISPKKVAELHH 171 gls.pglvgalfypddghvdParlvraLaraAealGveilegteVtgler +l+ ++lvga+++p+d++v a +++aLa aA ++Gv+i+ +t V+++ + KIAA1990 172 LLNvHDLVGAMHVPEDAVVSSADVALALASAASQNGVQIYDRTSVLHVMV 221 egggrvv.VeTedGeirAfiAdkVVnAaGawsdelarllgl.l.prIvPY + g+ v++VeT++G+i++ + Vn+aG w+ e lgl+ +++ KIAA1990 222 KKGQ-VTgVETDKGQIEC---QYFVNCAGQWAYE----LGLsNeEP---- 259 fLkplrd.iplrPvrGqvlvteplpealapallppdeavgdsrgvyiipr ++ipl+++ +++l+t+pl+++l + +++ v + ++yi+ + KIAA1990 260 ------VsIPLHACEHFYLLTRPLETPL-QSS--TPTIVDADGRIYIRNW 300 eGgvliGattd.grldfgggpeevsg.didvdlarleellerarrlfPqL +Gg+l G+ + +f g + + + ++ d++++e ll+ ++r++P+L KIAA1990 301 QGGILSGGFEKnPKPIFTEGKNQLEIqNLQEDWDHFEPLLSSLLRRMPEL 350 adadilrawaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGhgg + ++i+ ++ +tpD++ ++G++p + g++v++G ++ KIAA1990 351 ETLEIMKLVNCPETFTPDMR----------CIMGESPAVQGYFVLAGMNS 390 hGltlapaiGkllAel<-* Gl ++ ++Gk+lAe+ KIAA1990 391 AGLSFGGGAGKYLAEW 406 PF01266.14.ls: domain 1 of 1, from 48 to 406: score 315.5, E = 9.1e-92 *->DVvVIGGGivGlstAyhLakrGl.sVtllErgdigsGaSgrnaGlih Vv+ GGGi+G s+AyhL+k G+++++llE+g++++G++ aG+++ KIAA1990 48 QVVICGGGITGTSVAYHLSKMGWkDIVLLEQGRLAAGSTRFCAGILS 94 pglryleqgrWllldlvreagkera.llarla.esrdllreleleelgid + + ++++a++s++l+ +l ++e+gi+ KIAA1990 95 TA--------------------RHLtIEQKMAdYSNKLYYQL-EQETGIQ 123 cdfrrtGglylardeaeld.lerlaaalralGlpedvelLdaeelreleP +++ rtG+++la ++++l +l+r+ a l+ G+ ++e+++++ ++el KIAA1990 124 TGYTRTGSIFLAQTQDRLIsLKRINAGLNVIGI--PSEIISPKKVAELHH 171 gls.pglvgalfypddghvdParlvraLaraAealGveilegteVtgler +l+ ++lvga+++p+d++v a +++aLa aA ++Gv+i+ +t V+++ + KIAA1990 172 LLNvHDLVGAMHVPEDAVVSSADVALALASAASQNGVQIYDRTSVLHVMV 221 egggrvv.VeTedGeirAfiAdkVVnAaGawsdelarllgl.l.prIvPY + g+ v++VeT++G+i++ + Vn+aG w+ e lgl+ +++ KIAA1990 222 KKGQ-VTgVETDKGQIEC---QYFVNCAGQWAYE----LGLsNeEP---- 259 fLkplrd.iplrPvrGqvlvteplpealapallppdeavgdsrgvyiipr ++ipl+++ +++l+t+pl+++l + +++ v + ++yi+ + KIAA1990 260 ------VsIPLHACEHFYLLTRPLETPL-QSS--TPTIVDADGRIYIRNW 300 eGgvliGattd.grldfgggpeevsg.didvdlarleellerarrlfPqL +Gg+l G+ + +f g + + + ++ d++++e ll+ ++r++P+L KIAA1990 301 QGGILSGGFEKnPKPIFTEGKNQLEIqNLQEDWDHFEPLLSSLLRRMPEL 350 adadilrawaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGhgg + ++i+ ++ +tpD++ ++G++p + g++v++G ++ KIAA1990 351 ETLEIMKLVNCPETFTPDMR----------CIMGESPAVQGYFVLAGMNS 390 hGltlapaiGkllAel<-* Gl ++ ++Gk+lAe+ KIAA1990 391 AGLSFGGGAGKYLAEW 406 PF01571.11.fs: domain 1 of 1, from 527 to 744: score 303.8, E = 1e-95 *->lfDvSHmgkiev..rGadavkFLqsLtTNDlakLkpGdkatYtvlLN ++D+S+++k+e++++G++a++ Lq+L+ NDl+ +++G ++++t++LN KIAA1990 527 VIDMSSFTKFEItsTGDQALEVLQYLFSNDLD-VPVG-HIVHTGMLN 571 eqGgvlDDlivyrtse.efllvtNagcrekdlawLkkykehaaevdagkd e Gg+ +D+ + r++++ f+++++++++++++awLkk++++ +++ KIAA1990 572 EGGGYENDCSIARLNKrSFFMISPTDQQVHCWAWLKKHMPK------DSN 615 lkienltdelallAvQGPkaedvLqkLvtpeytDlskdslkffgttaaad l +e++t+++++l+++GP+a dvL++L++++ +++d++++++++++++ KIAA1990 616 LLLEDVTWKYTALNLIGPRAVDVLSELSYAP---MTPDHFPSLFCKEMSV 662 lkgfskcrvsRtGYTGEdGfEIyipsekAvhlweallaagqeygvkPcGL ++ +++rv+ +++TGE+Gf++yip e+A+h+++++++ gq+yg++++G+ KIAA1990 663 GYA-NGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAGY 711 gARdtLRlEaGmcLYGqDldegdttPlEAglewt<-* +A+++LR+E++++++GqD++ ttPlE+g e + KIAA1990 712 YALRSLRIEKFFAFWGQDINN-LTTPLECGRESR 744 PF01571.11.ls: domain 1 of 1, from 527 to 744: score 305.7, E = 7.6e-89 *->lfDvSHmgkiev..rGadavkFLqsLtTNDlakLkpGdkatYtvlLN ++D+S+++k+e++++G++a++ Lq+L+ NDl+ +++G ++++t++LN KIAA1990 527 VIDMSSFTKFEItsTGDQALEVLQYLFSNDLD-VPVG-HIVHTGMLN 571 eqGgvlDDlivyrtse.efllvtNagcrekdlawLkkykehaaevdagkd e Gg+ +D+ + r++++ f+++++++++++++awLkk++++ +++ KIAA1990 572 EGGGYENDCSIARLNKrSFFMISPTDQQVHCWAWLKKHMPK------DSN 615 lkienltdelallAvQGPkaedvLqkLvtpeytDlskdslkffgttaaad l +e++t+++++l+++GP+a dvL++L++++ +++d++++++++++++ KIAA1990 616 LLLEDVTWKYTALNLIGPRAVDVLSELSYAP---MTPDHFPSLFCKEMSV 662 lkgfskcrvsRtGYTGEdGfEIyipsekAvhlweallaagqeygvkPcGL ++ +++rv+ +++TGE+Gf++yip e+A+h+++++++ gq+yg++++G+ KIAA1990 663 GYA-NGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAGY 711 gARdtLRlEaGmcLYGqDldegdttPlEAglewt<-* +A+++LR+E++++++GqD++ ttPlE+g e + KIAA1990 712 YALRSLRIEKFFAFWGQDINN-LTTPLECGRESR 744 PF08669.1.fs: domain 1 of 1, from 751 to 860: score 128.1, E = 1.2e-37 *->gdFvGkeallrqkenGvirrRlVgLiltgkgiplresivagyevlvd +dF+G++all+qk+nGv ++Rl+++il++++ +l+ ++++g++++++ KIAA1990 751 MDFIGRDALLQQKQNGV-YKRLTMFILDDHDSDLDLWPWWGEPIYRN 796 gAvgekvGkvTSGtfSPTLgkgIAlayVdkelskpGt............e g ++vGk+TS+++S++L+++++l++V+++ +++G+++ + + +++e KIAA1990 797 G---QYVGKTTSSAYSYSLERHVCLGFVHNFSEDTGEeqvvtadfinrgE 843 levevrGkrvpakvvkw<-* +e+++ G r++ak + KIAA1990 844 YEIDIAGYRFQAKAKLY 860 PF08669.1.ls: domain 1 of 1, from 751 to 860: score 130.0, E = 5.9e-36 *->gdFvGkeallrqkenGvirrRlVgLiltgkgiplresivagyevlvd +dF+G++all+qk+nGv ++Rl+++il++++ +l+ ++++g++++++ KIAA1990 751 MDFIGRDALLQQKQNGV-YKRLTMFILDDHDSDLDLWPWWGEPIYRN 796 gAvgekvGkvTSGtfSPTLgkgIAlayVdkelskpGt............e g ++vGk+TS+++S++L+++++l++V+++ +++G+++ + + +++e KIAA1990 797 G---QYVGKTTSSAYSYSLERHVCLGFVHNFSEDTGEeqvvtadfinrgE 843 levevrGkrvpakvvkw<-* +e+++ G r++ak + KIAA1990 844 YEIDIAGYRFQAKAKLY 860 //