hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18300545/chunk_1/iprscan-20080502-18300545.nocrc
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Query sequence: KIAA1989
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00282                                                 102.9    3.7e-26   1
SM00181                                                  96.0    4.5e-24   4
SM00179                                                  81.2    1.2e-19   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00181    1/4     306   341 ..     1    32 []     8.6       44
SM00282    1/1     365   502 ..     1   137 []   102.9  3.7e-26
SM00179    1/3     531   566 ..     1    34 []    18.5   0.0084
SM00181    2/4     532   566 ..     1    32 []    30.0  0.00032
SM00179    2/3     568   604 ..     1    34 []    17.9     0.01
SM00181    3/4     571   604 ..     1    32 []    28.4  0.00097
SM00179    3/3     606   642 ..     1    34 []    44.8  1.2e-08
SM00181    4/4     609   642 ..     1    32 []    28.9  0.00069

Alignments of top-scoring domains:
SM00181: domain 1 of 4, from 306 to 341: score 8.6, E = 44
                   *->eCa..pCsnGgtEqnGtCi.......sytC.CpgpGytgrCe<-*
                      +C ++pC  +      +C++ + +++ + C+Cp pG  g C    
    KIAA1989   306    PCVekPCPGD-----MQCVgyeasrrPFLCqCP-PGKLGECS    341  

SM00282: domain 1 of 1, from 365 to 502: score 102.9, E = 3.7e-26
                   *->t.lsisfsFrTtspnGlLlyagggdflaleLvlEDsdgdGrlvlryd
                       ++++ +++rT ++nG+++y+  +  + l +v      dG+l +++d
    KIAA1989   365    EdFKLALRLRTLQSNGIIMYTRANPCIILKIV------DGKLWFQLD 405  

                   lGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpvs
                   +Gs    gp++l  ++   + +nDG WH+V +e n++  +Ls+D  + v+
    KIAA1989   406 CGS----GPGILGISG---RAVNDGSWHSVFLELNRNFTSLSLD-DSYVE 447  

                   ges.....t.LdldkeesgplylGGlPe............lpvspgFrGC
                   ++  +   ++L ++    +++y+G l   ++ ++ ++++ + v +gF+GC
    KIAA1989   448 RRRaplyfQtLSTE----SSIYFGALVQadnirsltdtrvTQVLSGFQGC 493  

                   irnlrvngk<-*
                   + ++ +n++   
    KIAA1989   494 LDSVILNNN    502  

SM00179: domain 1 of 3, from 531 to 566: score 18.5, E = 0.0084
                   *->DiDEC...pCqnGGptgtCiN..vGSYrC.CppGyt.rnCe<-*
                        D C+++pCq+GG    C+  + G+Y+C+C   +t+rnCe   
    KIAA1989   531    --DACkrsPCQHGG---SCTGlpSGGYQCtCLSQFTgRNCE    566  

SM00181: domain 2 of 4, from 532 to 566: score 30.0, E = 0.00032
                   *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-*
                       C ++pC++G     G C++ ++++y+C+C    +tg++Ce   
    KIAA1989   532    ACKrsPCQHG-----GSCTglpsgGYQCtCL-SQFTGrNCE    566  

SM00179: domain 2 of 3, from 568 to 604: score 17.9, E = 0.01
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                       i  C ++pC+nGG    C    + + C+C++G t+ +Ce   
    KIAA1989   568    EITACfpnPCRNGG---SCDPiGNTFICnCKAGLTgVTCE    604  

SM00181: domain 3 of 4, from 571 to 604: score 28.4, E = 0.00097
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C ++pC nG     G C + ++++ C+C+ +G tg +Ce   
    KIAA1989   571    ACFpnPCRNG-----GSCDpignTFICnCK-AGLTGvTCE    604  

SM00179: domain 3 of 3, from 606 to 642: score 44.8, E = 1.2e-08
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                      Di+EC+++ C nGG    C+N  GS+ C+C pGy ++ C    
    KIAA1989   606    DINECereECENGG---SCVNvFGSFLCnCTPGYVgQYCG    642  

SM00181: domain 4 of 4, from 609 to 642: score 28.9, E = 0.00069
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                      eC+++ C+nG     G C++  +s+ C+C  pGy g++C    
    KIAA1989   609    ECEreECENG-----GSCVnvfgSFLCnCT-PGYVGqYCG    642  

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