hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18300545/chunk_1/iprscan-20080502-18300545.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1989 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02210.14.fs Laminin G domain 115.4 2.5e-33 1 PF02210.14.ls Laminin G domain 117.3 4.1e-32 1 PF00008.17.ls EGF-like domain 104.9 2.2e-28 4 PF00008.17.fs EGF-like domain 101.7 1.2e-27 4 PF00054.13.fs Laminin G domain 63.9 5.6e-18 1 PF00054.13.ls Laminin G domain 65.7 1.4e-16 1 PF07974.3.ls EGF-like domain 28.6 2e-05 3 PF00028.8.fs Cadherin domain 18.4 0.00011 2 PF00028.8.ls Cadherin domain 11.5 0.016 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00028.8.ls 1/1 65 146 .. 1 107 [] 11.5 0.016 PF02210.14.ls 1/1 373 502 .. 1 141 [] 117.3 4.1e-32 PF00054.13.ls 1/1 373 505 .. 1 159 [] 65.7 1.4e-16 PF00054.13.fs 1/1 373 505 .. 1 159 [] 63.9 5.6e-18 PF02210.14.fs 1/1 373 502 .. 1 141 [] 115.4 2.5e-33 PF00008.17.fs 2/4 533 565 .. 1 38 [] 29.8 1.9e-07 PF00008.17.ls 2/4 533 565 .. 1 38 [] 31.6 2.5e-06 PF00008.17.ls 3/4 572 603 .. 1 38 [] 33.4 7.4e-07 PF00008.17.fs 3/4 572 603 .. 1 38 [] 31.6 6e-08 PF00008.17.ls 4/4 610 641 .. 1 38 [] 35.3 2e-07 PF00008.17.fs 4/4 610 641 .. 1 38 [] 33.5 1.8e-08 Alignments of top-scoring domains: PF00028.8.ls: domain 1 of 1, from 65 to 146: score 11.5, E = 0.016 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + ++++ + p G ++ ++AtD D +++++ + + F+ KIAA1989 65 FIVTMEDDFP-GGVIGKIHATDQD----MYDVLTFALKSEQ-KSLFK 105 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++++G i LD g+Y+L+v+++D+ KIAA1989 106 VNSHDGK----IIALGGLDS-----GKYVLNVSVSDG----------RFQ 136 statvtitVl<-* + v+++V+ KIAA1989 137 VPIDVVVHVE 146 PF02210.14.ls: domain 1 of 1, from 373 to 502: score 117.3, E = 4.1e-32 *->FRTatqpnGlLlyaggkglpdradpksdKflaLeLvdGrlvlrydlG +RT q+nG+++y+ ++ + L +vdG+l +++d+G KIAA1989 373 LRT-LQSNGIIMYTRA----------NP-CIILKIVDGKLWFQLDCG 407 sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssdt sg+++l +sg+ +nDG WH+V +e n++ +Ls+D++ v ++++p ++ KIAA1989 408 SGPgILGISGrAVNDGSWHSVFLELNRNFTSLSLDDSyVErRrAPLYFQ- 456 lslnlngplylGGlpesskssllrliaaqnlvt.vs.gFvGCirnvring +l +++++y+G l+ + ++l+++ + t+v +gF+GC+ +v +n+ KIAA1989 457 -TLSTESSIYFGALVQADNIRSLTDTRV----TqVLsGFQGCLDSVILNN 501 e<-* + KIAA1989 502 N 502 PF00054.13.ls: domain 1 of 1, from 373 to 505: score 65.7, E = 1.4e-16 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl RT +++G+++ Y+ ++ + +l++vdG+l +++d KIAA1989 373 LRTLQSNGIIM--YTRANPCI-----------ILKIVDGKLWFQLDC 406 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG Gsg p+++ + + +nDG WHsv+le n+ +Ls+d+ KIAA1989 407 GSG---PGILGISGRAVNDGSWHSVFLELNRNFTSLSLDDSY-------- 445 svvtgesplgattesttLdvdgkLyvGGlPel...dqavkarrlaispsf v+++++pl + + tL+++ +y+G l +++ + r + ++ +f KIAA1989 446 -VERRRAPL-YFQ---TLSTESSIYFGALVQAdniRSLTDTRVTQVLSGF 490 kGCirdviingkpld<-* GC+ +vi+n+ l KIAA1989 491 QGCLDSVILNNNELP 505 PF00054.13.fs: domain 1 of 1, from 373 to 505: score 63.9, E = 5.6e-18 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl RT +++G+++ Y+ ++ + +l++vdG+l +++d KIAA1989 373 LRTLQSNGIIM--YTRANPCI-----------ILKIVDGKLWFQLDC 406 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG Gsg p+++ + + +nDG WHsv+le n+ +Ls+d+ KIAA1989 407 GSG---PGILGISGRAVNDGSWHSVFLELNRNFTSLSLDDSY-------- 445 svvtgesplgattesttLdvdgkLyvGGlPel...dqavkarrlaispsf v+++++pl + + tL+++ +y+G l +++ + r + ++ +f KIAA1989 446 -VERRRAPL-YFQ---TLSTESSIYFGALVQAdniRSLTDTRVTQVLSGF 490 kGCirdviingkpld<-* GC+ +vi+n+ l KIAA1989 491 QGCLDSVILNNNELP 505 PF02210.14.fs: domain 1 of 1, from 373 to 502: score 115.4, E = 2.5e-33 *->FRTatqpnGlLlyaggkglpdradpksdKflaLeLvdGrlvlrydlG +RT q+nG+++y+ ++ + L +vdG+l +++d+G KIAA1989 373 LRT-LQSNGIIMYTRA----------NP-CIILKIVDGKLWFQLDCG 407 sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssdt sg+++l +sg+ +nDG WH+V +e n++ +Ls+D++ v ++++p ++ KIAA1989 408 SGPgILGISGrAVNDGSWHSVFLELNRNFTSLSLDDSyVErRrAPLYFQ- 456 lslnlngplylGGlpesskssllrliaaqnlvt.vs.gFvGCirnvring +l +++++y+G l+ + ++l+++ + t+v +gF+GC+ +v +n+ KIAA1989 457 -TLSTESSIYFGALVQADNIRSLTDTRV----TqVLsGFQGCLDSVILNN 501 e<-* + KIAA1989 502 N 502 PF00008.17.fs: domain 2 of 4, from 533 to 565: score 29.8, E = 1.9e-07 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* C pC++gG C+ +p+ggy+C C +tG++C KIAA1989 533 CKRS--PCQHGGSCTGLPsGGYQCTCLSQ----FTGRNC 565 PF00008.17.ls: domain 2 of 4, from 533 to 565: score 31.6, E = 2.5e-06 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* C pC++gG C+ +p+ggy+C C +tG++C KIAA1989 533 CKRS--PCQHGGSCTGLPsGGYQCTCLSQ----FTGRNC 565 PF00008.17.ls: domain 3 of 4, from 572 to 603: score 33.4, E = 7.4e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pn pC ngG C + ++++ C C+ G tG +C KIAA1989 572 CFPN--PCRNGGSCDPIGNTFICNCKAG----LTGVTC 603 PF00008.17.fs: domain 3 of 4, from 572 to 603: score 31.6, E = 6e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pn pC ngG C + ++++ C C+ G tG +C KIAA1989 572 CFPN--PCRNGGSCDPIGNTFICNCKAG----LTGVTC 603 PF00008.17.ls: domain 4 of 4, from 610 to 641: score 35.3, E = 2e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C + C ngG Cv++ g++ C C+pG y G +C KIAA1989 610 CERE--ECENGGSCVNVFGSFLCNCTPG----YVGQYC 641 PF00008.17.fs: domain 4 of 4, from 610 to 641: score 33.5, E = 1.8e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C + C ngG Cv++ g++ C C+pG y G +C KIAA1989 610 CERE--ECENGGSCVNVFGSFLCNCTPG----YVGQYC 641 //