hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18282772/chunk_1/iprscan-20080502-18282772.nocrc
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Query sequence: KIAA1988
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00320 138.0 1e-36 10
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00320 1/10 16 55 .. 1 46 [] 16.8 1.1
SM00320 2/10 59 98 .. 1 46 [] 9.1 18
SM00320 3/10 101 140 .. 1 46 [] 28.0 0.0013
SM00320 4/10 145 183 .. 1 46 [] 25.8 0.0061
SM00320 5/10 192 233 .. 1 46 [] 13.2 4
SM00320 6/10 236 275 .. 1 46 [] 4.6 91
SM00320 7/10 287 324 .. 1 46 [] 7.2 35
SM00320 8/10 437 476 .. 1 46 [] 5.8 60
SM00320 9/10 481 523 .. 1 46 [] 13.3 3.9
SM00320 10/10 526 565 .. 1 46 [] 14.2 2.7
Alignments of top-scoring domains:
SM00320: domain 1 of 10, from 16 to 55: score 16.8, E = 1.1
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
+ +r ++ + ++++va++ + n+la++ +Dgt+ ++
KIAA1988 16 KvHRVRFFNYVPS--GIRCVAYNNQS------NRLAVSRtDGTVEIY 54
d<-*
+
KIAA1988 55 N 55
SM00320: domain 2 of 10, from 59 to 98: score 9.1, E = 18
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
+ + + ++gH++ + ++++ ++l+s++ +g i +
KIAA1988 59 NyFQEKFFPGHES-RATEALCWAEG-------QRLFSAGlNGEIMEY 97
d<-*
d
KIAA1988 98 D 98
SM00320: domain 3 of 10, from 101 to 140: score 28.0, E = 0.0013
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
+ + +++ g p++s+a sp+g ++l++g++Dg+++l+
KIAA1988 101 AlNIKYAMDAFGG--PIWSMAASPSG------SQLLVGCeDGSVKLF 139
d<-*
KIAA1988 140 Q 140
SM00320: domain 4 of 10, from 145 to 183: score 25.8, E = 0.0061
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
+ + r ++ ++ +++s++++p+g +++a+gs D i ++
KIAA1988 145 KiQFERNFDRQKS--RILSLSWHPSG------THIAAGSiDY-ISVF 182
d<-*
d
KIAA1988 183 D 183
SM00320: domain 5 of 10, from 192 to 233: score 13.2, E = 4
*->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
+ + r + g ++ ++ V++vaf +dg ++s ++ g++ +
KIAA1988 192 KmIVDRQYMGVSKRkCIVWGVAFLSDG-------TIISVDsAGKVQF 231
Wd<-*
Wd
KIAA1988 232 WD 233
SM00320: domain 6 of 10, from 236 to 275: score 4.6, E = 91
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
t++l+++ ++ +V s+a+ + + +++g gt+ +
KIAA1988 236 TgTLVKSHLIANA--DVQSIAVADQE------DSFVVGTaEGTVFHF 274
d<-*
KIAA1988 275 Q 275
SM00320: domain 7 of 10, from 287 to 324: score 7.2, E = 35
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
++ ++ ++ Ht+ +V++va sp+ l+sg++D ++ +
KIAA1988 287 QwVRTKPFQHHTH--DVRTVAHSPT--------ALISGGtDTHLVFR 323
d<-*
KIAA1988 324 P 324
SM00320: domain 8 of 10, from 437 to 476: score 5.8, E = 60
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
+ k ++++++ + + + fs d+ + l+++s+ g +++
KIAA1988 437 SlKRVSKMPAFLR--SALQILFSEDS------TKLFVASnQGALHIV 475
d<-*
KIAA1988 476 Q 476
SM00320: domain 9 of 10, from 481 to 523: score 13.3, E = 3.9
*->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
+ k l+ +++++g + + +a+spdg n+la++++ +
KIAA1988 481 SfKHLHAFQpqsGTVE--AMCLLAVSPDG------NWLAASGtSAGV 519
rlWd<-*
++++
KIAA1988 520 HVYN 523
SM00320: domain 10 of 10, from 526 to 565: score 14.2, E = 2.7
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
+ kl +t ++ + pVt++a+ p+ n l+ + +D ++ +
KIAA1988 526 QlKLHCTVPAYNF--PVTAMAIAPNT------NNLVIAHsDQQVFEY 564
d<-*
+
KIAA1988 565 S 565
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