hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18282772/chunk_1/iprscan-20080502-18282772.nocrc
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Query sequence: KIAA1988
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        75.8    1.3e-19   9
PF00400.22.fs WD domain, G-beta repeat                        70.2    8.2e-19   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/8      28    55 ..    10    38 .]    10.8    0.045
PF00400.22.fs   3/8     102   140 ..     1    38 []    22.0  3.2e-05
PF00400.22.ls   3/9     102   140 ..     1    38 []    23.9  0.00052
PF00400.22.fs   4/8     146   183 ..     1    38 []    13.0    0.011
PF00400.22.fs   6/8     288   317 ..     1    31 [.    13.0    0.011

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 8, from 28 to 55: score 10.8, E = 0.045
                   *->stVtcvafspdsgpllasgSrDgtikiWd<-*
                      s+++cva++   +++la +  Dgt+ i++   
    KIAA1988    28    SGIRCVAYNNQ-SNRLAVSRTDGTVEIYN    55   

PF00400.22.fs: domain 3 of 8, from 102 to 140: score 22.0, E = 3.2e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + k   ++  ++++++a sp+ g++l+ g++Dg++k++    
    KIAA1988   102    LNIKyAMdAFGGPIWSMAASPS-GSQLLVGCEDGSVKLFQ    140  

PF00400.22.ls: domain 3 of 9, from 102 to 140: score 23.9, E = 0.00052
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + k   ++  ++++++a sp+ g++l+ g++Dg++k++    
    KIAA1988   102    LNIKyAMdAFGGPIWSMAASPS-GSQLLVGCEDGSVKLFQ    140  

PF00400.22.fs: domain 4 of 8, from 146 to 183: score 13.0, E = 0.011
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  + ++  +s + +++++p+ g+++a gS    i ++d   
    KIAA1988   146    IQFErNFdRQKSRILSLSWHPS-GTHIAAGSI-DYISVFD    183  

PF00400.22.fs: domain 6 of 8, from 288 to 317: score 13.0, E = 0.011
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrD<-*
                      +  ++ +++Ht+ V+ va sp     l+sg+ D   
    KIAA1988   288    WVRTkPFqHHTHDVRTVAHSPT---ALISGGTD    317  

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