# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk07519s1.fasta.huge -Q ../query/KIAA1988.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1988, 636 aa vs ./tmplib.25089 library 1986869 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.0800+/-0.00475; mu= 24.8916+/- 0.326 mean_var=78.5900+/-19.283, 0's: 0 Z-trim: 7 B-trim: 89 in 1/39 Lambda= 0.144674 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1261 ( 787 res) hh15855b ( 787) 173 46.4 1.1e-05 KIAA1547 ( 863 res) fh14154 ( 863) 161 44.0 6.5e-05 KIAA0596 ( 1531 res) hg01605 (1531) 155 43.2 0.0002 >>KIAA1261 ( 787 res) hh15855b (787 aa) initn: 68 init1: 64 opt: 173 Z-score: 193.9 bits: 46.4 E(): 1.1e-05 Smith-Waterman score: 179; 26.230% identity (56.831% similar) in 183 aa overlap (47-214:611-787) 20 30 40 50 60 70 KIAA19 VHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEA .::.. ...: : . : :: . :. KIAA12 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCI 590 600 610 620 630 80 90 100 110 120 130 KIAA19 LCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSV .: .:...::.. . .::. : : . :.:.. :.: : :: :...: KIAA12 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMENSNV 640 650 660 670 680 690 140 150 160 170 180 KIAA19 KLFQIT-PDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYI----------SVFDVK .....: ::: :.. . .: .:::.. : ... . : . :.:. : KIAA12 EVLHVTKPDKYQLHLH----ESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQSK 700 710 720 730 740 750 190 200 210 220 230 240 KIAA19 SGSAVHK--MIVDRQYM--GVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVK .:.: . . :: .:. : . .: :. : . KIAA12 ESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 760 770 780 250 260 270 280 290 300 KIAA19 SHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDV >>KIAA1547 ( 863 res) fh14154 (863 aa) initn: 106 init1: 63 opt: 161 Z-score: 180.0 bits: 44.0 E(): 6.5e-05 Smith-Waterman score: 162; 25.683% identity (56.284% similar) in 183 aa overlap (47-214:687-863) 20 30 40 50 60 70 KIAA19 VHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEA .::.. ...: : . : :: . :. KIAA15 PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCI 660 670 680 690 700 710 80 90 100 110 120 130 KIAA19 LCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSV .: .:...::.. . .::. : : . :.:.. :.: : :: :...: KIAA15 DISHDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNV 720 730 740 750 760 770 140 150 160 170 180 KIAA19 KLFQIT-PDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYI----------SVFDVK .... : ::: :.. . .: .:::.. : ... . : . :.:. : KIAA15 EVLHHTKPDKYQLHLH----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 780 790 800 810 820 830 190 200 210 220 230 240 KIAA19 SGSAVHK--MIVDRQYM--GVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVK .:.: . . .: .:. : . .: :. : . KIAA15 ESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 840 850 860 250 260 270 280 290 300 KIAA19 SHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDV >>KIAA0596 ( 1531 res) hg01605 (1531 aa) initn: 154 init1: 69 opt: 155 Z-score: 171.3 bits: 43.2 E(): 0.0002 Smith-Waterman score: 177; 23.293% identity (55.020% similar) in 249 aa overlap (5-232:508-747) 10 20 KIAA19 EHREGERGAAG--MGEFKVHRVRFFNYV------ :.. :.: :: ..::... .. . KIAA05 LDTELPGGDKADASLLDPRVGIRSVCVSPNGQHLASGDRMGTLRVHELQSLSEMLKVEAH 480 490 500 510 520 530 30 40 50 60 70 80 KIAA19 PSGIRCVAYNNQSNRL---AVSRTDGTVEIYNLSANYFQEKFFPGHESRATEA-LCWAEG : : :. :.. .. : : . : ... . . .: .. . : : : . . ..: KIAA05 DSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDG 540 550 560 570 580 590 90 100 110 120 130 KIAA19 Q-RLFSAGLNGEIMEYDLQALN--IKYAMDAF---GGPIWSMAASPSGSQLLVGCEDGSV : :..: : . :. : . .... ...: . :: . .::.: .. KIAA05 QVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNI 600 610 620 630 640 650 140 150 160 170 180 190 KIAA19 KLFQITPDKIQ-FERNFDRQKSRILSLSWHPSGTHIAAGSIDY-ISVFDVKSGSAVHKMI ..:.:. : . . .. . . . ..... ::: .::.. : .:.:: .:: : :. KIAA05 RIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMF 660 670 680 690 700 710 200 210 220 230 240 250 KIAA19 VDRQYMGVSKRKCIVWGVAFLSDGT-IISVDSAGKVQFWDSATGTLVKSHLIANADVQSI : :. :: :. : .: .:::.. . . : KIAA05 ------GHSE---IVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQ 720 730 740 750 760 260 270 280 290 300 310 KIAA19 AVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALIS KIAA05 RGGKQQGPSSPQRASGPNRHQAPSMLSPGPALSSDSDKEGEDEGTEEELPALPVLAKSTK 770 780 790 800 810 820 636 residues in 1 query sequences 1986869 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:24:36 2008 done: Thu Dec 18 15:24:37 2008 Total Scan time: 0.510 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]