hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18232611/chunk_1/iprscan-20080502-18232611.nocrc
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Query sequence: KIAA1985
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  52.0    7.7e-11   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/4     195   228 ..     1    34 []     7.4       73
SM00028    2/4     503   536 ..     1    34 []    17.0      2.7
SM00028    3/4     711   744 ..     1    34 []     4.2  1.7e+02
SM00028    4/4     833   866 ..     1    34 []    23.4    0.031

Alignments of top-scoring domains:
SM00028: domain 1 of 4, from 195 to 228: score 7.4, E = 73
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ ++ lG +  ++ ++ +A  y+e+A+ +       
    KIAA1985   195    ARLCFLLGRLSIRKVKLSQARVYFEEAIHILNGA    228  

SM00028: domain 2 of 4, from 503 to 536: score 17.0, E = 2.7
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        +++ lG+a+   g+ + A + y +AL  + +    
    KIAA1985   503    GVIYNLLGLALQGEGRVNRAAKSYLRALNRAQEV    536  

SM00028: domain 3 of 4, from 711 to 744: score 4.2, E = 1.7e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      aea++  G +++++ + +  + +++ A++ + +    
    KIAA1985   711    AEAWLGAGRLHYLMQEDELVELCLQAAIQTALKS    744  

SM00028: domain 4 of 4, from 833 to 866: score 23.4, E = 0.031
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        a+ +l+ +y++l  y++A+++y k L+l P     
    KIAA1985   833    LVAFHRLATVYYSLHMYEMAEDCYLKTLSLCPPW    866  

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