hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18232611/chunk_1/iprscan-20080502-18232611.nocrc
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Query sequence: KIAA1985
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                        61.3    2.9e-15   6
PF07719.7.fs Tetratricopeptide repeat                        52.7    9.7e-14   8
PF00515.18.fs Tetratricopeptide repeat                        43.3    2.6e-11   6
PF00515.18.ls Tetratricopeptide repeat                        37.9    3.2e-08   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00515.18.fs   3/6     503   536 ..     1    34 []    10.6    0.052
PF00515.18.ls   2/4     503   536 ..     1    34 []    12.6     0.16
PF00515.18.fs   5/6     833   864 ..     1    32 [.    21.4  4.4e-05
PF00515.18.ls   4/4     833   866 ..     1    34 []    17.7    0.038

Alignments of top-scoring domains:
PF00515.18.fs: domain 3 of 6, from 503 to 536: score 10.6, E = 0.052
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        +y+ lG+a+   g+ + A + y +AL    +    
    KIAA1985   503    GVIYNLLGLALQGEGRVNRAAKSYLRALNRAQEV    536  

PF00515.18.ls: domain 2 of 4, from 503 to 536: score 12.6, E = 0.16
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        +y+ lG+a+   g+ + A + y +AL    +    
    KIAA1985   503    GVIYNLLGLALQGEGRVNRAAKSYLRALNRAQEV    536  

PF00515.18.fs: domain 5 of 6, from 833 to 864: score 21.4, E = 4.4e-05
                   *->aeayynlGnaylklgkydeAieayekALeldP<-*
                        a+ +l+ +y++l  y+ A+++y k L+l P   
    KIAA1985   833    LVAFHRLATVYYSLHMYEMAEDCYLKTLSLCP    864  

PF00515.18.ls: domain 4 of 4, from 833 to 866: score 17.7, E = 0.038
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        a+ +l+ +y++l  y+ A+++y k L+l P     
    KIAA1985   833    LVAFHRLATVYYSLHMYEMAEDCYLKTLSLCPPW    866  

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