hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18181925/chunk_1/iprscan-20080502-18181925.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1982 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 489.3 1.8e-142 18 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/18 9 31 .. 1 23 [] 27.7 0.0016 SM00355 2/18 37 59 .. 1 23 [] 30.2 0.00029 SM00355 3/18 65 87 .. 1 23 [] 31.4 0.00013 SM00355 4/18 121 143 .. 1 23 [] 27.0 0.0026 SM00355 5/18 149 171 .. 1 23 [] 26.7 0.0031 SM00355 6/18 177 199 .. 1 23 [] 27.9 0.0014 SM00355 7/18 205 227 .. 1 23 [] 25.2 0.0093 SM00355 8/18 233 255 .. 1 23 [] 29.5 0.00045 SM00355 9/18 261 283 .. 1 23 [] 30.9 0.00017 SM00355 10/18 317 337 .. 1 23 [] 7.1 50 SM00355 11/18 345 367 .. 1 23 [] 29.4 0.00048 SM00355 12/18 373 395 .. 1 23 [] 30.8 0.00018 SM00355 13/18 429 451 .. 1 23 [] 31.6 0.00011 SM00355 14/18 457 479 .. 1 23 [] 27.0 0.0027 SM00355 15/18 485 507 .. 1 23 [] 28.8 0.00076 SM00355 16/18 513 535 .. 1 23 [] 24.9 0.011 SM00355 17/18 541 563 .. 1 23 [] 27.1 0.0025 SM00355 18/18 569 591 .. 1 23 [] 26.1 0.0048 Alignments of top-scoring domains: SM00355: domain 1 of 18, from 9 to 31: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f++ +L H r+H KIAA1982 9 YTCGE-CGKTFRQSaNLYVHRRIH 31 SM00355: domain 2 of 18, from 37 to 59: score 30.2, E = 0.00029 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgk f +++aL++H ++H KIAA1982 37 YKCED-CGKAFGRYtALNQHKKIH 59 SM00355: domain 3 of 18, from 65 to 87: score 31.4, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+s ++L+ H r+H KIAA1982 65 YKCEE-CGKAFNSStNLTAHKRIH 87 SM00355: domain 4 of 18, from 121 to 143: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + +L++H ++H KIAA1982 121 YKCKE-CGKAFIHSlHLNKHEKIH 143 SM00355: domain 5 of 18, from 149 to 171: score 26.7, E = 0.0031 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+ +s +++ +H r+H KIAA1982 149 YKCKQ-CGKVITSSsSFAKHKRIH 171 SM00355: domain 6 of 18, from 177 to 199: score 27.9, E = 0.0014 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgk f+s + L++H r+H KIAA1982 177 FECLE-CGKAFTSStTLTKHRRIH 199 SM00355: domain 7 of 18, from 205 to 227: score 25.2, E = 0.0093 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ L H r+H KIAA1982 205 YTCEV-CGKAFRQSaILYVHRRIH 227 SM00355: domain 8 of 18, from 233 to 255: score 29.5, E = 0.00045 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f++ +L H r+H KIAA1982 233 YTCEE-CGKTFRQSaNLYVHRRIH 255 SM00355: domain 9 of 18, from 261 to 283: score 30.9, E = 0.00017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f ++++L++H ++H KIAA1982 261 YKCEE-CGKAFGRYtDLNQHKKIH 283 SM00355: domain 10 of 18, from 317 to 337: score 7.1, E = 50 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f ++L++H + KIAA1982 317 YKCEE-CGKAFAPStDLNQHTK-- 337 SM00355: domain 11 of 18, from 345 to 367: score 29.4, E = 0.00048 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + aL++H ++H KIAA1982 345 YKCEE-CGKAFGWSiALNQHKKIH 367 SM00355: domain 12 of 18, from 373 to 395: score 30.8, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L+ H rvH KIAA1982 373 YKCEE-CGKAFSRSrNLTTHRRVH 395 SM00355: domain 13 of 18, from 429 to 451: score 31.6, E = 0.00011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ ++L+rH ++H KIAA1982 429 YKCKE-CGKVFKQSsHLNRHEKIH 451 SM00355: domain 14 of 18, from 457 to 479: score 27.0, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+ +s +++ +H r+H KIAA1982 457 YKCKE-CGKVITSSsSFAKHKRIH 479 SM00355: domain 15 of 18, from 485 to 507: score 28.8, E = 0.00076 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgk f+s + L++H r+H KIAA1982 485 FKCLE-CGKAFTSStTLTKHRRIH 507 SM00355: domain 16 of 18, from 513 to 535: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ L H r+H KIAA1982 513 YTCEE-CGKAFRQSaILYVHRRIH 535 SM00355: domain 17 of 18, from 541 to 563: score 27.1, E = 0.0025 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f++ +L H ++H KIAA1982 541 YTCGE-CGKTFRQSaNLYAHKKIH 563 SM00355: domain 18 of 18, from 569 to 591: score 26.1, E = 0.0048 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C Cgk+f++ +L H ++H KIAA1982 569 YTCGD-CGKTFRQSaNLYAHKKIH 591 //