hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18130392/chunk_1/iprscan-20080502-18130392.nocrc
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Query sequence: KIAA1979
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 110.6    1.8e-28   5

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/5      15    37 ..     1    23 []    20.4     0.26
SM00355      2/5      43    65 ..     1    23 []    28.5  0.00093
SM00355      3/5      71    93 ..     1    23 []    18.6     0.88
SM00355      4/5      99   121 ..     1    23 []    31.6  0.00011
SM00355      5/5     127   149 ..     1    23 []    11.5       16

Alignments of top-scoring domains:
SM00355: domain 1 of 5, from 15 to 37: score 20.4, E = 0.26
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk fs+ ++ + H + H   
    KIAA1979    15    YKCND-CGKIFSHMsSIVYHHKFH    37   

SM00355: domain 2 of 5, from 43 to 65: score 28.5, E = 0.00093
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C++ fs k++L+rH r+H   
    KIAA1979    43    YKCEE-CDEAFSFKsNLERHRRIH    65   

SM00355: domain 3 of 5, from 71 to 93: score 18.6, E = 0.88
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+fs+ ++L+ H r H   
    KIAA1979    71    YRCNR-CGKTFSHTsSLTCHHRLH    93   

SM00355: domain 4 of 5, from 99 to 121: score 31.6, E = 0.00011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+++f+ k++L+rH r+H   
    KIAA1979    99    YKCEE-CDETFRYKsNLERHRRIH    121  

SM00355: domain 5 of 5, from 127 to 149: score 11.5, E = 16
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++  gk+fs+k+ L+rH r H   
    KIAA1979   127    YKCNE-YGKTFSQKsCLTRHHRLH    149  

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