hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18130392/chunk_1/iprscan-20080502-18130392.nocrc
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Query sequence: KIAA1979
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.fs Zinc finger, C2H2 type                         142.5      1e-39   6
PF00096.16.ls Zinc finger, C2H2 type                         142.3    1.2e-39   6
PF01096.9.fs Transcription factor S-II (TFIIS)               28.8    3.2e-08   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/6      15    37 ..     1    24 []    22.9  0.00019
PF00096.16.ls   1/6      15    37 ..     1    24 []    24.8  0.00028
PF00096.16.ls   2/6      43    65 ..     1    24 []    36.3  9.6e-08
PF00096.16.fs   2/6      43    65 ..     1    24 []    34.4  2.6e-07
PF00096.16.fs   3/6      71    93 ..     1    24 []    23.3  0.00015
PF00096.16.ls   3/6      71    93 ..     1    24 []    25.2  0.00021
PF00096.16.ls   4/6      99   121 ..     1    24 []    37.3  4.9e-08
PF00096.16.fs   4/6      99   121 ..     1    24 []    35.3  1.5e-07

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 6, from 15 to 37: score 22.9, E = 0.00019
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dCgk Fs+ s+   H + H   
    KIAA1979    15    YKCN-DCGKIFSHMSSIVYHHKFH    37   

PF00096.16.ls: domain 1 of 6, from 15 to 37: score 24.8, E = 0.00028
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dCgk Fs+ s+   H + H   
    KIAA1979    15    YKCN-DCGKIFSHMSSIVYHHKFH    37   

PF00096.16.ls: domain 2 of 6, from 43 to 65: score 36.3, E = 9.6e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C+++Fs ksnL+rH+r+H   
    KIAA1979    43    YKCE-ECDEAFSFKSNLERHRRIH    65   

PF00096.16.fs: domain 2 of 6, from 43 to 65: score 34.4, E = 2.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C+++Fs ksnL+rH+r+H   
    KIAA1979    43    YKCE-ECDEAFSFKSNLERHRRIH    65   

PF00096.16.fs: domain 3 of 6, from 71 to 93: score 23.3, E = 0.00015
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cgk+Fs+ s+L+ H r H   
    KIAA1979    71    YRCN-RCGKTFSHTSSLTCHHRLH    93   

PF00096.16.ls: domain 3 of 6, from 71 to 93: score 25.2, E = 0.00021
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cgk+Fs+ s+L+ H r H   
    KIAA1979    71    YRCN-RCGKTFSHTSSLTCHHRLH    93   

PF00096.16.ls: domain 4 of 6, from 99 to 121: score 37.3, E = 4.9e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C+++F+ ksnL+rH+r+H   
    KIAA1979    99    YKCE-ECDETFRYKSNLERHRRIH    121  

PF00096.16.fs: domain 4 of 6, from 99 to 121: score 35.3, E = 1.5e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C+++F+ ksnL+rH+r+H   
    KIAA1979    99    YKCE-ECDETFRYKSNLERHRRIH    121  

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