hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18094280/chunk_1/iprscan-20080502-18094280.nocrc
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Query sequence: KIAA1977
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 126.3    3.3e-33   5
SM00454                                                  54.2    1.6e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/5      18    47 ..     1    30 []    32.5  5.8e-05
SM00248    2/5      51    80 ..     1    30 []    27.7   0.0016
SM00248    3/5      84   113 ..     1    30 []    29.5  0.00045
SM00248    4/5     118   147 ..     1    30 []    30.5  0.00023
SM00248    5/5     151   180 ..     1    30 []     6.2    7e+02
SM00454    1/1     372   438 ..     1    67 []    54.2  1.6e-11

Alignments of top-scoring domains:
SM00248: domain 1 of 5, from 18 to 47: score 32.5, E = 5.8e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpL++A + g+  +v+lLl++g+++n+   
    KIAA1977    18    GGWTPLMYASYIGHDTIVHLLLEAGVSVNV    47   

SM00248: domain 2 of 5, from 51 to 80: score 27.7, E = 0.0016
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpL+lA + gn++++ +Ll+ ga++++   
    KIAA1977    51    EGQTPLMLASSCGNESIAYFLLQQGAELEM    80   

SM00248: domain 3 of 5, from 84 to 113: score 29.5, E = 0.00045
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+T+L ++ + g+ ++v++Lld+ga+ n+   
    KIAA1977    84    QGWTALFHCTSAGHQHMVRFLLDSGANANV    113  

SM00248: domain 4 of 5, from 118 to 147: score 30.5, E = 0.00023
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpL+ Aa+ g++ +v+++l++g+ ++a   
    KIAA1977   118    CGFTPLMEAAAAGHEIIVQYFLNHGVKVDA    147  

SM00248: domain 5 of 5, from 151 to 180: score 6.2, E = 7e+02
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+ +lA ++g++++v l+  +++++ +   
    KIAA1977   151    SGATARMLAKQYGHMKIVALMDTYSPSLPK    180  

SM00454: domain 1 of 1, from 372 to 438: score 54.2, E = 1.6e-11
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      ++   p ++a+ Le ig+ +Y   F+++ +d +++l lt e+dLke+
    KIAA1977   372    APySGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLT-ESDLKEI 417  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gitl G+ +k  sai    ++   
    KIAA1977   418 GITLFGPKRKMTSAIARWHSS    438  

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