hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18094280/chunk_1/iprscan-20080502-18094280.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1977 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 141.4 2.3e-39 5 PF00023.20.fs Ankyrin repeat 137.4 3.5e-38 5 PF00536.20.fs SAM domain (Sterile alpha motif) 52.6 7.5e-15 1 PF07647.7.fs SAM domain (Sterile alpha motif) 48.8 1.2e-13 1 PF00536.20.ls SAM domain (Sterile alpha motif) 54.6 3.1e-13 1 PF07647.7.ls SAM domain (Sterile alpha motif) 50.7 4.4e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/5 18 50 .. 1 33 [] 33.1 3e-08 PF00023.20.ls 1/5 18 50 .. 1 33 [] 35.1 2.3e-07 PF00023.20.ls 2/5 51 83 .. 1 33 [] 40.9 4e-09 PF00023.20.fs 2/5 51 83 .. 1 33 [] 38.9 7.2e-10 PF00023.20.ls 3/5 84 116 .. 1 33 [] 24.7 0.00031 PF00023.20.fs 3/5 84 116 .. 1 33 [] 22.7 2.4e-05 PF00023.20.ls 4/5 118 150 .. 1 33 [] 39.0 1.5e-08 PF00023.20.fs 4/5 118 150 .. 1 33 [] 37.0 2.4e-09 PF00023.20.ls 5/5 151 183 .. 1 33 [] 1.7 17 PF00023.20.fs 5/5 151 170 .. 1 20 [. 5.7 1.3 PF07647.7.fs 1/1 372 438 .. 1 72 [] 48.8 1.2e-13 PF07647.7.ls 1/1 372 438 .. 1 72 [] 50.7 4.4e-12 PF00536.20.fs 1/1 373 436 .. 1 65 [] 52.6 7.5e-15 PF00536.20.ls 1/1 373 436 .. 1 65 [] 54.6 3.1e-13 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 5, from 18 to 50: score 33.1, E = 3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++A++ g+ +v lLl++G ++n+ + KIAA1977 18 GGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTP 50 PF00023.20.ls: domain 1 of 5, from 18 to 50: score 35.1, E = 2.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++A++ g+ +v lLl++G ++n+ + KIAA1977 18 GGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTP 50 PF00023.20.ls: domain 2 of 5, from 51 to 83: score 40.9, E = 4e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL+lA+++gn++++ +Ll+qGA+l ++d KIAA1977 51 EGQTPLMLASSCGNESIAYFLLQQGAELEMKDI 83 PF00023.20.fs: domain 2 of 5, from 51 to 83: score 38.9, E = 7.2e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL+lA+++gn++++ +Ll+qGA+l ++d KIAA1977 51 EGQTPLMLASSCGNESIAYFLLQQGAELEMKDI 83 PF00023.20.ls: domain 3 of 5, from 84 to 116: score 24.7, E = 0.00031 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L + + g+ +v++Ll+ GA+ n++ KIAA1977 84 QGWTALFHCTSAGHQHMVRFLLDSGANANVREP 116 PF00023.20.fs: domain 3 of 5, from 84 to 116: score 22.7, E = 2.4e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L + + g+ +v++Ll+ GA+ n++ KIAA1977 84 QGWTALFHCTSAGHQHMVRFLLDSGANANVREP 116 PF00023.20.ls: domain 4 of 5, from 118 to 150: score 39.0, E = 1.5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +GfTPL+ Aa g++ +v+++l++G ++a+d KIAA1977 118 CGFTPLMEAAAAGHEIIVQYFLNHGVKVDARDH 150 PF00023.20.fs: domain 4 of 5, from 118 to 150: score 37.0, E = 2.4e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +GfTPL+ Aa g++ +v+++l++G ++a+d KIAA1977 118 CGFTPLMEAAAAGHEIIVQYFLNHGVKVDARDH 150 PF00023.20.ls: domain 5 of 5, from 151 to 183: score 1.7, E = 17 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+ +lA ++g++++v l + +l KIAA1977 151 SGATARMLAKQYGHMKIVALMDTYSPSLPKSLY 183 PF00023.20.fs: domain 5 of 5, from 151 to 170: score 5.7, E = 1.3 *->dGfTPLHlAalrgnlevvkl<-* G T+ +lA ++g++++v l KIAA1977 151 SGATARMLAKQYGHMKIVAL 170 PF07647.7.fs: domain 1 of 1, from 372 to 438: score 48.8, E = 1.2e-13 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ ++++a+ Le+ig+ +Y + F++q ++ ++ l lte+dL KIAA1977 372 APYSGPQDLAALLEQIGC-LKYLQVFEEQDVDL-RIF-LTLTESDL- 414 klalGitsvghRkkilkkiqelkqq<-* k ++Git++g+ +k+ ++i + + KIAA1977 415 K-EIGITLFGPKRKMTSAIARWHSS 438 PF07647.7.ls: domain 1 of 1, from 372 to 438: score 50.7, E = 4.4e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ ++++a+ Le+ig+ +Y + F++q ++ ++ l lte+dL KIAA1977 372 APYSGPQDLAALLEQIGC-LKYLQVFEEQDVDL-RIF-LTLTESDL- 414 klalGitsvghRkkilkkiqelkqq<-* k ++Git++g+ +k+ ++i + + KIAA1977 415 K-EIGITLFGPKRKMTSAIARWHSS 438 PF00536.20.fs: domain 1 of 1, from 373 to 436: score 52.6, E = 7.5e-15 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +++ +++++ Le ig+ +Y + F + + +d++ +l+lte DL+++G KIAA1977 373 PYSGPQDLAALLEQIGCLKYLQVF-EEQDVDLRIFLTLTESDLKEIG 418 vtllGHrkKIlssIqgLk<-* +tl+G+ K+ s+I +++ KIAA1977 419 ITLFGPKRKMTSAIARWH 436 PF00536.20.ls: domain 1 of 1, from 373 to 436: score 54.6, E = 3.1e-13 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +++ +++++ Le ig+ +Y + F + + +d++ +l+lte DL+++G KIAA1977 373 PYSGPQDLAALLEQIGCLKYLQVF-EEQDVDLRIFLTLTESDLKEIG 418 vtllGHrkKIlssIqgLk<-* +tl+G+ K+ s+I +++ KIAA1977 419 ITLFGPKRKMTSAIARWH 436 //