# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg02988.fasta.huge -Q ../query/KIAA1976.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1976, 351 aa
 vs ./tmplib.25089 library

1987154 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.2305+/-0.00694; mu= 9.2669+/- 0.473
 mean_var=168.5599+/-38.796, 0's: 0 Z-trim: 1  B-trim: 5 in 1/39
 Lambda= 0.098786

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1777  ( 954 res)   fh19201x1                   ( 954)  193 39.3   0.001


>>KIAA1777  ( 954 res)   fh19201x1                        (954 aa)
 initn: 348 init1: 174 opt: 193  Z-score: 158.6  bits: 39.3 E(): 0.001
Smith-Waterman score: 306;  31.977% identity (60.465% similar) in 172 aa overlap (2-172:718-858)

                                            10        20        30 
KIAA19                              PPGALQEVVQLEKQLGGQLIQEPRVLHFKDS
                                     : :.::::. :.. ::::..::..:::: .
KIAA17 AVKQLKVAVFGCMSCNSLDYNLRVYCVDNTPCAFQEVVSDERHQGGQLLEEPKLLHFKGN
       690       700       710       720       730       740       

              40        50        60        70        80        90 
KIAA19 YHNLRLSIHDVPSSLWKSKLLVSYQVRARAVASAQEAWSLGSPDTSSLQPHQEIPFYHIW
         .:..:. :.:  ::. :                       : :.     ::.:: ..:
KIAA17 TFSLQISVLDIPPFLWRIK-----------------------PFTAC----QEVPFSRVW
       750       760                              770           780

             100       110       120       130       140       150 
KIAA19 NGTQRYLHCTFTLERVSPSTSDLACKLWVWQVEGDGQSFSINFNITKVDGRGCRTAVTCF
        .... :::.:.::: .:.:..:.::. . :..:  : .... .: . .    : ..: :
KIAA17 CSNRQPLHCAFSLERYTPTTTQLSCKICIRQLKGHEQILQVQTSILESE----RETITFF
              790       800       810       820           830      

              160       170       180       190       200       210
KIAA19 HYQLPTSP-QNAPALPALPPTLPPACPQAHLLLETPWQLPPRLRDREAQVQMGLGEGSAG
         .  : : :..:    .: ..                                      
KIAA17 AQEDSTFPAQTGPKAFKIPYSIRQRICATFDTPNAKGKDWQMLAQKNSINRNLSYFATQS
        840       850       860       870       880       890      




351 residues in 1 query   sequences
1987154 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:11 2008 done: Thu Dec 18 15:24:12 2008
 Total Scan time:  0.360 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]