hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18062966/chunk_1/iprscan-20080502-18062966.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1975 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.fs Putative GTPase activating protein for Arf 168.8 3e-48 1 PF01412.9.ls Putative GTPase activating protein for Arf 170.7 3.5e-48 1 PF00169.19.fs PH domain 63.9 5.4e-19 1 PF00169.19.ls PH domain 65.9 1.2e-16 1 PF00023.20.fs Ankyrin repeat 48.7 1.4e-12 2 PF00023.20.ls Ankyrin repeat 39.0 1.5e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.ls 1/1 169 354 .. 1 92 [] 65.9 1.2e-16 PF00169.19.fs 1/1 169 354 .. 1 92 [] 63.9 5.4e-19 PF01412.9.ls 1/1 375 495 .. 1 137 [] 170.7 3.5e-48 PF01412.9.fs 1/1 375 495 .. 1 137 [] 168.8 3e-48 PF00023.20.fs 1/2 534 566 .. 1 33 [] 37.0 2.5e-09 PF00023.20.ls 1/2 534 566 .. 1 33 [] 39.0 1.5e-08 PF00023.20.ls 2/2 567 595 .. 1 33 [] 0.0 29 PF00023.20.fs 2/2 567 592 .. 1 26 [. 11.7 0.028 Alignments of top-scoring domains: PF00169.19.ls: domain 1 of 1, from 169 to 354: score 65.9, E = 1.2e-16 *->vikeGwLlkkg..gkkswkkRyfvLfd.dvLlyykdkk....kkpkg +ik+G Llk++++++k+wkk y++L++++vL+yy + ++ + +k+ KIAA1975 169 PIKQGMLLKRSgkWLKTWKKKYVTLCSnGVLTYYSSLGdymkNIHKK 215 sipLsgiqvtkvpdn................................... i+L++++++ + + ++ ++ + +++++++ +++ + + + +++ + KIAA1975 216 EIDLRTSTIKVPGKWpslatsacapisssksnglskdmealhmsansdig 265 .................................................. +++ +++ +++++++ + +++++ +++++ +++++++ ++++ +++ KIAA1975 266 lgdsicfspsissttspklnlppsphankkkhlkkkstnnlkddglssta 315 .krkncFeirt.dretlllqaeseeerkeWvkaiqsair<-* ++++ F i++ +++t +++a+++eer Wv+aiqs+i KIAA1975 316 eEEEEKFMIVSvTGQTCHFKATTYEERDAWVQAIQSQIL 354 PF00169.19.fs: domain 1 of 1, from 169 to 354: score 63.9, E = 5.4e-19 *->vikeGwLlkkg..gkkswkkRyfvLfd.dvLlyykdkk....kkpkg +ik+G Llk++++++k+wkk y++L++++vL+yy + ++ + +k+ KIAA1975 169 PIKQGMLLKRSgkWLKTWKKKYVTLCSnGVLTYYSSLGdymkNIHKK 215 sipLsgiqvtkvpdn................................... i+L++++++ + + ++ ++ + +++++++ +++ + + + +++ + KIAA1975 216 EIDLRTSTIKVPGKWpslatsacapisssksnglskdmealhmsansdig 265 .................................................. +++ +++ +++++++ + +++++ +++++ +++++++ ++++ +++ KIAA1975 266 lgdsicfspsissttspklnlppsphankkkhlkkkstnnlkddglssta 315 .krkncFeirt.dretlllqaeseeerkeWvkaiqsair<-* ++++ F i++ +++t +++a+++eer Wv+aiqs+i KIAA1975 316 eEEEEKFMIVSvTGQTCHFKATTYEERDAWVQAIQSQIL 354 PF01412.9.ls: domain 1 of 1, from 375 to 495: score 170.7, E = 3.5e-48 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + +lq +++ + gN++C DC nP WaS+nlGv+ CieCSGiHR+ KIAA1975 375 AMALQSIQNMR-GNSHCVDCET-QNPKWASLNLGVLMCIECSGIHRS 419 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L G+ +S+V RSl LD W+ elrk++s +GN+ ans+wE+ + + KIAA1975 420 L-GTRLSRV--RSLELDDWPV-ELRKVMS-SIGNDLANSIWEGSSQGQTK 464 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++ s r+++e +i+ KYe klf+ ++++ e KIAA1975 465 PSIEST---------REEKERWIRSKYEHKLFLAPLPCTE 495 PF01412.9.fs: domain 1 of 1, from 375 to 495: score 168.8, E = 3e-48 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + +lq +++ + gN++C DC nP WaS+nlGv+ CieCSGiHR+ KIAA1975 375 AMALQSIQNMR-GNSHCVDCET-QNPKWASLNLGVLMCIECSGIHRS 419 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L G+ +S+V RSl LD W+ elrk++s +GN+ ans+wE+ + + KIAA1975 420 L-GTRLSRV--RSLELDDWPV-ELRKVMS-SIGNDLANSIWEGSSQGQTK 464 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++ s r+++e +i+ KYe klf+ ++++ e KIAA1975 465 PSIEST---------REEKERWIRSKYEHKLFLAPLPCTE 495 PF00023.20.fs: domain 1 of 2, from 534 to 566: score 37.0, E = 2.5e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+LHlA+++gn+ +++lL+ +G d+ a+d KIAA1975 534 DGCTALHLACRKGNVVLAQLLIWYGVDVMARDA 566 PF00023.20.ls: domain 1 of 2, from 534 to 566: score 39.0, E = 1.5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+LHlA+++gn+ +++lL+ +G d+ a+d KIAA1975 534 DGCTALHLACRKGNVVLAQLLIWYGVDVMARDA 566 PF00023.20.ls: domain 2 of 2, from 567 to 595: score 0.0, E = 29 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+L +A + + e++ Ll+ d KIAA1975 567 HGNTALTYARQASSQECINVLLQ----YGCPDE 595 PF00023.20.fs: domain 2 of 2, from 567 to 592: score 11.7, E = 0.028 *->dGfTPLHlAalrgnlevvklLlsqGA<-* +G+T+L +A + + e++ Ll++G+ KIAA1975 567 HGNTALTYARQASSQECINVLLQYGC 592 //