hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18031399/chunk_1/iprscan-20080502-18031399.nocrc
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Query sequence: KIAA1973
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 267.4    1.1e-75   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     626   971 ..     1   296 []   267.4  1.1e-75

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 626 to 971: score 267.4, E = 1.1e-75
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                        +V+         +                kc++GyCIDLle++a+
    KIAA1973   626    NDTVPI-------KFK---------------KCCYGYCIDLLEKIAE 650  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   +++F+++l++V+DGkYG+ +++   W+G++g+L+rg+A+mAV++++I+++
    KIAA1973   651 DMNFDFDLYIVGDGKYGAWKNG--HWTGLVGDLLRGTAHMAVTSFSINTA 698  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePfskkL.........
                   R++v+DFT PF++++++ILv+ +d   +++ +F++P+++    +     +
    KIAA1973   699 RSQVIDFTSPFFSTSLGILVRTRDT-AAPIGAFMWPLHWTMwlgifvalh 747  

                   ..AAfLTvermesp....................................
                    +A fLT+  + sp + +++++++++  + ++  +       +++   ++
    KIAA1973   748 itAVFLTLYEWKSPfgltpkgrnrskvfsfssalnicyallfgrtvaikp 797  

                   ........................................IssveDLakr
                   ++  +++   +          ++ + +      +++  +++s+++D++++
    KIAA1973   798 pkcwtgrflmnlwaifcmfclstytanlaavmvgekiyeeLSGIHDPKLH 847  

                   npQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrskspsvfvksl
                   +p++ +++GTvr ss+e + ++     ++  m++yM      ++++v ++
    KIAA1973   848 HPSQGFRFGTVRESSAEDYVRQ-----SFPEMHEYM------RRYNVPAT 886  

                   seGvqrvlnsk.GnYAFlmEstyleYeasrDpnCdYKLvtvGevfgskGY
                    +Gv+ ++n +++++AF+m+ + l+Ye+s D++C+  L tvG++f+ +GY
    KIAA1973   887 PDGVEYLKNDPeKLDAFIMDKALLDYEVSIDADCK--LLTVGKPFAIEGY 934  

                   GIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   GI+lp +SPl+ ++S  I ++++ G++++L++KW++    
    KIAA1973   935 GIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRV    971  

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