hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18031399/chunk_1/iprscan-20080502-18031399.nocrc
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Query sequence: KIAA1973
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00060.17.ls Ligand-gated ion channel                       338.2    1.3e-98   1
PF00060.17.fs Ligand-gated ion channel                       336.4    4.5e-98   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00060.17.fs   1/1     735  1013 ..     1   304 []   336.4  4.5e-98
PF00060.17.ls   1/1     735  1013 ..     1   304 []   338.2  1.3e-98

Alignments of top-scoring domains:
PF00060.17.fs: domain 1 of 1, from 735 to 1013: score 336.4, E = 4.5e-98
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      ++++Wl+i ++ l++++v++++++w sP++ ++++++r+        
    KIAA1973   735    HWTMWLGI-FVALHITAVFLTLYEWKSPFGLTPKGRNRS-------- 772  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                         f++s++l+ +++ l+ + ++ + P++++gR+++++W++F+++++
    KIAA1973   773 ----KVFSFSSALNICYALLFGrTVAIKPPKCWTGRFLMNLWAIFCMFCL 818  

                   sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes
                   s+YTANLAA+++ e+++++ ++++D+++++   +  ++r+g+++++++e 
    KIAA1973   819 STYTANLAAVMVGEKIYEELSGIHDPKLHH-PSQ--GFRFGTVRESSAED 865  

                   kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE
                   +   +r+ +++m+ +++r     ++v ++ +Gv+ ++n p ++l+AF+m+
    KIAA1973   866 Y---VRQSFPEMHEYMRR-----YNVPATPDGVEYLKNDP-EKLDAFIMD 906  

                   styleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeL
                    + l+yev+ + dC+L tvG  +f+ +GYGI+lp +SPl+ ++s  I ++
    KIAA1973   907 KALLDYEVSIDADCKLLTVGK-PFAIEGYGIGLPPNSPLTANISELISQY 955  

                   sEsGelekLenKWwkkkgkCpsesta.vsssqLglenfaGlFliLgiGlv
                   +  G++++L++KW++    C + s+a +++ q+g+++f GlF++L+iG++
    KIAA1973   956 KSHGFMDMLHDKWYRVV-PCGKRSFAvTETLQMGIKHFSGLFVLLCIGFG 1004 

                   LallvalfE<-*
                   L++l+ ++E   
    KIAA1973  1005 LSILTTIGE    1013 

PF00060.17.ls: domain 1 of 1, from 735 to 1013: score 338.2, E = 1.3e-98
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      ++++Wl+i ++ l++++v++++++w sP++ ++++++r+        
    KIAA1973   735    HWTMWLGI-FVALHITAVFLTLYEWKSPFGLTPKGRNRS-------- 772  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                         f++s++l+ +++ l+ + ++ + P++++gR+++++W++F+++++
    KIAA1973   773 ----KVFSFSSALNICYALLFGrTVAIKPPKCWTGRFLMNLWAIFCMFCL 818  

                   sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes
                   s+YTANLAA+++ e+++++ ++++D+++++   +  ++r+g+++++++e 
    KIAA1973   819 STYTANLAAVMVGEKIYEELSGIHDPKLHH-PSQ--GFRFGTVRESSAED 865  

                   kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE
                   +   +r+ +++m+ +++r     ++v ++ +Gv+ ++n p ++l+AF+m+
    KIAA1973   866 Y---VRQSFPEMHEYMRR-----YNVPATPDGVEYLKNDP-EKLDAFIMD 906  

                   styleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeL
                    + l+yev+ + dC+L tvG  +f+ +GYGI+lp +SPl+ ++s  I ++
    KIAA1973   907 KALLDYEVSIDADCKLLTVGK-PFAIEGYGIGLPPNSPLTANISELISQY 955  

                   sEsGelekLenKWwkkkgkCpsesta.vsssqLglenfaGlFliLgiGlv
                   +  G++++L++KW++    C + s+a +++ q+g+++f GlF++L+iG++
    KIAA1973   956 KSHGFMDMLHDKWYRVV-PCGKRSFAvTETLQMGIKHFSGLFVLLCIGFG 1004 

                   LallvalfE<-*
                   L++l+ ++E   
    KIAA1973  1005 LSILTTIGE    1013 

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