hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17563654/chunk_1/iprscan-20080502-17563654.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1969 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 337.7 7.9e-97 12 SM00349 127.6 1.4e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 54 114 .. 1 62 [] 127.6 1.4e-33 SM00355 1/12 223 245 .. 1 23 [] 22.4 0.063 SM00355 2/12 251 273 .. 1 23 [] 30.9 0.00018 SM00355 3/12 279 301 .. 1 23 [] 27.2 0.0023 SM00355 4/12 307 329 .. 1 23 [] 28.2 0.0012 SM00355 5/12 335 357 .. 1 23 [] 26.4 0.0041 SM00355 6/12 363 385 .. 1 23 [] 27.3 0.0021 SM00355 7/12 391 413 .. 1 23 [] 30.3 0.00027 SM00355 8/12 419 441 .. 1 23 [] 28.5 0.00094 SM00355 9/12 447 469 .. 1 23 [] 28.8 0.00077 SM00355 10/12 475 497 .. 1 23 [] 27.6 0.0018 SM00355 11/12 503 525 .. 1 23 [] 29.8 0.00037 SM00355 12/12 531 553 .. 1 23 [] 30.5 0.00023 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 54 to 114: score 127.6, E = 1.4e-33 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DVA++Fs EEWe+L paQ+nLY +VMlENY+nLv+LG +vsk KIAA1969 54 LTFRDVAIEFSLEEWECLNPAQQNLYMNVMLENYKNLVFLG-VAVSK 99 pdliskLEqgeEpwi<-* +d +++LEq++Epw+ KIAA1969 100 QDPVTCLEQEKEPWN 114 SM00355: domain 1 of 12, from 223 to 245: score 22.4, E = 0.063 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgksf+ +L +H r+H KIAA1969 223 FKCKK-CGKSFCMLlHLSQHKRIH 245 SM00355: domain 2 of 12, from 251 to 273: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ + L+rH r+H KIAA1969 251 YQCEE-CGKAFKWFsTLTRHKRIH 273 SM00355: domain 3 of 12, from 279 to 301: score 27.2, E = 0.0023 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f++ + L+ H +H KIAA1969 279 FKCEE-CGKAFKQSsTLTTHKIIH 301 SM00355: domain 4 of 12, from 307 to 329: score 28.2, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++L+ H +H KIAA1969 307 YRCEE-CGKAFNRSsHLTTHKIIH 329 SM00355: domain 5 of 12, from 335 to 357: score 26.4, E = 0.0041 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L H +H KIAA1969 335 YKCEE-CGKAFNQSsTLSTHKFIH 357 SM00355: domain 6 of 12, from 363 to 385: score 27.3, E = 0.0021 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f++ + L++H +H KIAA1969 363 YKCEE-CDKAFNRFsYLTKHKIIH 385 SM00355: domain 7 of 12, from 391 to 413: score 30.3, E = 0.00027 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L++H r+H KIAA1969 391 YKCEE-CGKGFNWSsTLTKHKRIH 413 SM00355: domain 8 of 12, from 419 to 441: score 28.5, E = 0.00094 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ ++L+ H ++H KIAA1969 419 YKCEV-CGKAFNESsNLTTHKMIH 441 SM00355: domain 9 of 12, from 447 to 469: score 28.8, E = 0.00077 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L+ H +H KIAA1969 447 YKCEE-CGKAFNRSpQLTAHKIIH 469 SM00355: domain 10 of 12, from 475 to 497: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ + L+ H r+H KIAA1969 475 YKCEE-CGKAFSQSsILTTHKRIH 497 SM00355: domain 11 of 12, from 503 to 525: score 29.8, E = 0.00037 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L++H +H KIAA1969 503 YKCEE-CGKAFNRSsNLTKHKIIH 525 SM00355: domain 12 of 12, from 531 to 553: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L++H ++H KIAA1969 531 YKCEE-CGKAFNQSsTLTKHRKIH 553 //