hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17563654/chunk_1/iprscan-20080502-17563654.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1969 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 408.0 1.3e-119 13 PF00096.16.fs Zinc finger, C2H2 type 397.2 2.2e-116 13 PF01352.17.fs KRAB box 88.5 1.6e-24 1 PF01352.17.ls KRAB box 90.5 4.7e-24 1 PF01286.9.fs XPA protein N-terminal 82.2 1.1e-22 13 PF01096.9.fs Transcription factor S-II (TFIIS) 66.6 6.3e-20 12 PF07754.2.fs Domain of unknown function (DUF1610) 55.6 6.7e-14 11 PF07754.2.ls Domain of unknown function (DUF1610) 34.2 4.1e-07 9 PF00130.12.fs Phorbol esters/diacylglycerol binding domain 21.9 2.5e-05 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 54 94 .. 1 41 [] 88.5 1.6e-24 PF01352.17.ls 1/1 54 94 .. 1 41 [] 90.5 4.7e-24 PF00096.16.ls 1/13 223 245 .. 1 24 [] 23.6 0.00066 PF00096.16.ls 2/13 251 273 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 2/13 251 273 .. 1 24 [] 32.9 5.8e-07 PF00096.16.fs 3/13 279 301 .. 1 24 [] 33.3 4.8e-07 PF00096.16.ls 3/13 279 301 .. 1 24 [] 35.2 2e-07 PF00096.16.ls 4/13 307 329 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 4/13 307 329 .. 1 24 [] 33.9 3.4e-07 PF00096.16.fs 5/13 335 357 .. 1 24 [] 30.4 2.5e-06 PF00096.16.ls 5/13 335 357 .. 1 24 [] 32.4 1.5e-06 PF00096.16.fs 6/13 363 385 .. 1 24 [] 30.1 2.9e-06 PF00096.16.ls 6/13 363 385 .. 1 24 [] 32.1 1.8e-06 PF00096.16.ls 7/13 391 413 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 7/13 391 413 .. 1 24 [] 33.7 3.9e-07 PF00096.16.ls 8/13 419 441 .. 1 24 [] 34.8 2.8e-07 PF00096.16.fs 8/13 419 441 .. 1 24 [] 32.8 6.2e-07 PF00096.16.ls 9/13 447 469 .. 1 24 [] 33.2 8.2e-07 PF00096.16.fs 9/13 447 469 .. 1 24 [] 31.3 1.5e-06 PF00096.16.ls 10/13 475 497 .. 1 24 [] 32.2 1.7e-06 PF00096.16.fs 10/13 475 497 .. 1 24 [] 30.2 2.8e-06 PF00096.16.fs 11/13 503 525 .. 1 24 [] 36.6 7.2e-08 PF00096.16.ls 11/13 503 525 .. 1 24 [] 38.6 2e-08 PF00096.16.fs 12/13 531 553 .. 1 24 [] 36.3 8.6e-08 PF00096.16.ls 12/13 531 553 .. 1 24 [] 38.3 2.5e-08 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 54 to 94: score 88.5, E = 1.6e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+ EEWe+L+paQ+nLY +VMlENy+nLv+lg KIAA1969 54 LTFRDVAIEFSLEEWECLNPAQQNLYMNVMLENYKNLVFLG 94 PF01352.17.ls: domain 1 of 1, from 54 to 94: score 90.5, E = 4.7e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+ EEWe+L+paQ+nLY +VMlENy+nLv+lg KIAA1969 54 LTFRDVAIEFSLEEWECLNPAQQNLYMNVMLENYKNLVFLG 94 PF00096.16.ls: domain 1 of 13, from 223 to 245: score 23.6, E = 0.00066 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ +L +H+r+H KIAA1969 223 FKCK-KCGKSFCMLLHLSQHKRIH 245 PF00096.16.ls: domain 2 of 13, from 251 to 273: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s+L+rH+r+H KIAA1969 251 YQCE-ECGKAFKWFSTLTRHKRIH 273 PF00096.16.fs: domain 2 of 13, from 251 to 273: score 32.9, E = 5.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s+L+rH+r+H KIAA1969 251 YQCE-ECGKAFKWFSTLTRHKRIH 273 PF00096.16.fs: domain 3 of 13, from 279 to 301: score 33.3, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++s+L++H+ +H KIAA1969 279 FKCE-ECGKAFKQSSTLTTHKIIH 301 PF00096.16.ls: domain 3 of 13, from 279 to 301: score 35.2, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++s+L++H+ +H KIAA1969 279 FKCE-ECGKAFKQSSTLTTHKIIH 301 PF00096.16.ls: domain 4 of 13, from 307 to 329: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+s+L++H+ +H KIAA1969 307 YRCE-ECGKAFNRSSHLTTHKIIH 329 PF00096.16.fs: domain 4 of 13, from 307 to 329: score 33.9, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+s+L++H+ +H KIAA1969 307 YRCE-ECGKAFNRSSHLTTHKIIH 329 PF00096.16.fs: domain 5 of 13, from 335 to 357: score 30.4, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+ +H KIAA1969 335 YKCE-ECGKAFNQSSTLSTHKFIH 357 PF00096.16.ls: domain 5 of 13, from 335 to 357: score 32.4, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+ +H KIAA1969 335 YKCE-ECGKAFNQSSTLSTHKFIH 357 PF00096.16.fs: domain 6 of 13, from 363 to 385: score 30.1, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+r s L++H+ +H KIAA1969 363 YKCE-ECDKAFNRFSYLTKHKIIH 385 PF00096.16.ls: domain 6 of 13, from 363 to 385: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+r s L++H+ +H KIAA1969 363 YKCE-ECDKAFNRFSYLTKHKIIH 385 PF00096.16.ls: domain 7 of 13, from 391 to 413: score 35.6, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ +s+L++H+r+H KIAA1969 391 YKCE-ECGKGFNWSSTLTKHKRIH 413 PF00096.16.fs: domain 7 of 13, from 391 to 413: score 33.7, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ +s+L++H+r+H KIAA1969 391 YKCE-ECGKGFNWSSTLTKHKRIH 413 PF00096.16.ls: domain 8 of 13, from 419 to 441: score 34.8, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL++H+++H KIAA1969 419 YKCE-VCGKAFNESSNLTTHKMIH 441 PF00096.16.fs: domain 8 of 13, from 419 to 441: score 32.8, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL++H+++H KIAA1969 419 YKCE-VCGKAFNESSNLTTHKMIH 441 PF00096.16.ls: domain 9 of 13, from 447 to 469: score 33.2, E = 8.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+ +L++H+ +H KIAA1969 447 YKCE-ECGKAFNRSPQLTAHKIIH 469 PF00096.16.fs: domain 9 of 13, from 447 to 469: score 31.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+ +L++H+ +H KIAA1969 447 YKCE-ECGKAFNRSPQLTAHKIIH 469 PF00096.16.ls: domain 10 of 13, from 475 to 497: score 32.2, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L++H+r+H KIAA1969 475 YKCE-ECGKAFSQSSILTTHKRIH 497 PF00096.16.fs: domain 10 of 13, from 475 to 497: score 30.2, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L++H+r+H KIAA1969 475 YKCE-ECGKAFSQSSILTTHKRIH 497 PF00096.16.fs: domain 11 of 13, from 503 to 525: score 36.6, E = 7.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+snL++H+ +H KIAA1969 503 YKCE-ECGKAFNRSSNLTKHKIIH 525 PF00096.16.ls: domain 11 of 13, from 503 to 525: score 38.6, E = 2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+snL++H+ +H KIAA1969 503 YKCE-ECGKAFNRSSNLTKHKIIH 525 PF00096.16.fs: domain 12 of 13, from 531 to 553: score 36.3, E = 8.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L++H+++H KIAA1969 531 YKCE-ECGKAFNQSSTLTKHRKIH 553 PF00096.16.ls: domain 12 of 13, from 531 to 553: score 38.3, E = 2.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L++H+++H KIAA1969 531 YKCE-ECGKAFNQSSTLTKHRKIH 553 //