hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17514097/chunk_1/iprscan-20080502-17514097.nocrc
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Query sequence: KIAA1966
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04146.6.fs YT521-B-like family                            202.4    1.4e-61   1
PF04146.6.ls YT521-B-like family                            204.4    2.5e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04146.6.fs   1/1     152   248 ..     1    98 []   202.4  1.4e-61
PF04146.6.ls   1/1     152   248 ..     1    98 []   204.4  2.5e-58

Alignments of top-scoring domains:
PF04146.6.fs: domain 1 of 1, from 152 to 248: score 202.4, E = 1.4e-61
                   *->LiFSVNgSGkFcGvAeMvspvdfnksqevWqlqagdskdkwgGkvFk
                      LiFSV++SGkF+G+A+++s++++  s+ +W+l+ag+s++++gG vFk
    KIAA1966   152    LIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGG-VFK 197  

                   VkWiivkDlPfqklrHllnpnNEnKPVkiSRDtQEveleiGiqllklFks
                   ++Wi++++lPf+k +Hl+np+NE+KPVki+RD+QE+ele+G+ql+ lF++
    KIAA1966   198 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPP 247  

                   y<-*
                   +   
    KIAA1966   248 D    248  

PF04146.6.ls: domain 1 of 1, from 152 to 248: score 204.4, E = 2.5e-58
                   *->LiFSVNgSGkFcGvAeMvspvdfnksqevWqlqagdskdkwgGkvFk
                      LiFSV++SGkF+G+A+++s++++  s+ +W+l+ag+s++++gG vFk
    KIAA1966   152    LIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGG-VFK 197  

                   VkWiivkDlPfqklrHllnpnNEnKPVkiSRDtQEveleiGiqllklFks
                   ++Wi++++lPf+k +Hl+np+NE+KPVki+RD+QE+ele+G+ql+ lF++
    KIAA1966   198 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPP 247  

                   y<-*
                   +   
    KIAA1966   248 D    248  

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