# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh23421.fasta.huge -Q ../query/KIAA1966.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1966, 480 aa vs ./tmplib.25089 library 1987025 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.2981+/-0.00596; mu= -0.4101+/- 0.401 mean_var=277.2927+/-66.056, 0's: 0 Z-trim: 6 B-trim: 5 in 1/39 Lambda= 0.077020 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0182 ( 1157 res) ha02329s1 (1157) 233 39.3 0.0016 >>KIAA0182 ( 1157 res) ha02329s1 (1157 aa) initn: 389 init1: 157 opt: 233 Z-score: 155.0 bits: 39.3 E(): 0.0016 Smith-Waterman score: 233; 37.288% identity (58.475% similar) in 118 aa overlap (363-480:224-332) 340 350 360 370 380 390 KIAA19 RRDVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGH : :: :: :: .: .:: .: KIAA01 YLAPHPFPHPAFRMDDSYCLSALRSPFYPIPTPG-SLPPLHPSAMHLHLSGVRYPPELSH 200 210 220 230 240 250 400 410 420 430 440 450 KIAA19 HPVPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRER . : . . ...:. ::: .: : :::.:::: :: :...:.::: KIAA01 SSLAALHSERMSGLSAERLQMDEELRR-------EREREREREREREADREREKERERER 260 270 280 290 300 460 470 480 KIAA19 DRGRDRERERERLCDRDRDRGERGRYRR .. :..:.:::: .:.:. :: : .: KIAA01 EKEREQEKEREREKEREREL-ERQREQRAREKELLAAKALEPSFLPVAELHGLRGHATEE 310 320 330 340 350 360 480 residues in 1 query sequences 1987025 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:51 2008 done: Thu Dec 18 15:23:51 2008 Total Scan time: 0.430 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]