# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pj02601.fasta.huge -Q ../query/KIAA1965.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1965, 565 aa vs ./tmplib.25089 library 1986940 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.7494+/-0.00518; mu= 21.8965+/- 0.353 mean_var=103.4842+/-23.494, 0's: 0 Z-trim: 9 B-trim: 0 in 0/40 Lambda= 0.126077 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA2036 ( 1322 res) pf06513 (1322) 458 94.8 4.5e-20 KIAA1781 ( 974 res) fg06971(revised) ( 974) 161 40.5 0.00072 KIAA0230 ( 1496 res) ha02538 (1496) 148 38.5 0.0045 >>KIAA2036 ( 1322 res) pf06513 (1322 aa) initn: 282 init1: 124 opt: 458 Z-score: 452.2 bits: 94.8 E(): 4.5e-20 Smith-Waterman score: 458; 33.654% identity (59.135% similar) in 208 aa overlap (361-563:16-218) 340 350 360 370 380 390 KIAA19 APHFHIDLDGYLLKVTTKAGLEISWDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIG : :. .:...:.. ::::...: .:: . KIAA20 GLVRSLLTMLPPGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRS 10 20 30 40 400 410 420 430 440 450 KIAA19 GDGNFKFDVDDFAESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQT .: .. .. :.:::. . .: .: : : : ... :. .: : . : KIAA20 RQGVLEPTAELAAHSWRL--SPLCPEPGDLPHP--CTMNTHRAGWARARCGALLQPLFTL 50 60 70 80 90 100 460 470 480 490 500 KIAA19 CHSTVDYATFYRSCVTDMCECPVHKNC--YCESFLAYTRACQREGIKVHWEPQQNCAATQ ::. : :. :. : : : .: : .. .:. : :.: .:.:. :. :. : KIAA20 CHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQELCS-LQ 110 120 130 140 150 160 510 520 530 540 550 560 KIAA19 CKHGAVYDTCGPGCIKTCDNWN-EIG-PCNK-PCVAGCHCPANLVLHKGRCIKPVLCPQR :. : ::..::: : :: . . : : :. :: :: :: . .:: : :..:. :: KIAA20 CEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHGGACLEPASCPCE 170 180 190 200 210 220 KIAA20 WGRNSFPPGSVLQKDCGNCTCQEGQWHCGGDGGHCEELVPACAEGEALCQENGHCVPHGW 230 240 250 260 270 280 >>KIAA1781 ( 974 res) fg06971(revised) (974 aa) initn: 75 init1: 70 opt: 161 Z-score: 161.4 bits: 40.5 E(): 0.00072 Smith-Waterman score: 275; 23.027% identity (41.546% similar) in 621 aa overlap (12-556:101-698) 10 20 30 40 KIAA19 WQSPAEPCVLRQCQEGVVTES-GVRCVVHCKNPLEHLGMCC .:.: . . : : . :. .: . : KIAA17 HCSNRCQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQ--CRHGASCD 80 90 100 110 120 50 60 70 80 90 KIAA19 PTCPGCVFE-GVQYQEGEEFQPEGSK---CT-KCSC-TGGRTQCVREVCPILSCPQHLSH : :. : ::. : ::. : .: : .:: . . : .:: . KIAA17 PRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGEC---ACPPGWTG 130 140 150 160 170 180 100 110 120 130 140 KIAA19 IPPGQCCPK-CLGQRKVFDLPF---GSCLFRSDVYDNGSSFLYDNCTA-CTCRDSTVVCK .: :: .:: : : :.: . .... : : : . :. KIAA17 AVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCS 190 200 210 220 230 240 150 160 170 180 190 KIAA19 RKCS-HPGG-CDQGQEGC-CE------ECLLRVPPEDIKV--CKFGNKIFQDGEMWSSIN ..:. : :: :. .: :: .: :. :: .. : . :. . KIAA17 QRCDCHNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPV 250 260 270 280 290 300 200 210 220 230 240 KIAA19 CTICACVKGRT--ECRNKQCIPISSCPQGKIL-----NRKGCCPI---CTEKPG----VC :.: : . .: :..: :.. .: : : : : :: :: :: KIAA17 TGACTCQPGWSGHHC-NESC-PVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVC 310 320 330 340 350 360 250 260 270 280 290 KIAA19 TVF---GDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSFSW---- .: : : . . : :::. : .:. . .: : . . : .: KIAA17 AVSCAAGTYGPNCSSICSCNNGGTCSPV-DGSCTCKEG-WQGL--DCTLPCPSGTWGLNC 370 380 390 400 410 300 310 320 330 340 KIAA19 TKSVELVLGE--SRVSLQQHLTVRWNGSRIALPCRAPHF------HIDL---DGYLLKVT ..: . : : .. . : : :. ::: : : : :: :: KIAA17 NESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADG-CDPVT 420 430 440 450 460 470 350 360 370 380 390 400 KIAA19 TKAGLEISWDGDSFVEVMAAPHLKGKLCGL-CGNYNGHKRDDLIGGDGNFKFDVDDF--A . .: : . : : :.. :. :: . . ::. . . : KIAA17 GHCCCLAGWTGIR-CDSTCPPGRWGPNCSVSCSCENGGSCSPE---DGSCEC-APGFRGP 480 490 500 510 520 530 410 420 430 440 450 460 KIAA19 ESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQTCHSTVDYATFYRS :. : .. .: : :: . . . :. : .. :... . : .. KIAA17 LCQRICPPGFYGHGCAQPCP-LCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQD 540 550 560 570 580 590 470 480 490 500 510 KIAA19 CVTDMCECPVHKNCY-----CESFLAYT-RACQREGIKVHWEPQQNC-AATQCKHGAVYD :. ..: : . .: :. : .. . :.. : : : : .:..:: . KIAA17 CA-QLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPA--CFHACSCHNGASCS 600 610 620 630 640 520 530 540 550 560 KIAA19 T------CGPG-----CIKTCDNWNEIGPCNKPCVAGCHCPANLVLHKGRCIKPVLCPQR . : :: : . : :.. : :. :. .:.: KIAA17 AEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVC--QCQNGASCDHISGKCTCRTGFTGQ 650 660 670 680 690 700 KIAA17 HCEQRCAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRCDQAALMMEELNPYTK 710 720 730 740 750 760 >>KIAA0230 ( 1496 res) ha02538 (1496 aa) initn: 99 init1: 75 opt: 148 Z-score: 147.0 bits: 38.5 E(): 0.0045 Smith-Waterman score: 148; 41.860% identity (58.140% similar) in 43 aa overlap (66-108:1451-1491) 40 50 60 70 80 90 KIAA19 LGMCCPTCPGCVFEGVQYQEGEEFQPEGSKCTKCSCTGGRTQCVREVCPILSCPQHLSHI :: : : :.. : :.:: .: .. KIAA02 KKLESRLSTTECVDAGGESHANNTKWKKDACTICECKDGQVTCFVEACPPATCAVPVN-- 1430 1440 1450 1460 1470 100 110 120 130 140 150 KIAA19 PPGQCCPKCLGQRKVFDLPFGSCLFRSDVYDNGSSFLYDNCTACTCRDSTVVCKRKCSHP :: ::: :: .: KIAA02 IPGACCPVCLQKRAEEKP 1480 1490 565 residues in 1 query sequences 1986940 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:49 2008 done: Thu Dec 18 15:23:49 2008 Total Scan time: 0.470 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]