hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17495829/chunk_1/iprscan-20080502-17495829.nocrc
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Query sequence: KIAA1965
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00216                                                 143.1    2.9e-38   1
SM00214                                                 106.2    3.8e-27   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00214    1/3      46   104 ..     1    75 []    49.0  6.3e-10
SM00214    2/3     118   169 ..     1    75 []    21.8    0.085
SM00214    3/3     181   237 ..     1    75 []    35.4  7.8e-06
SM00216    1/1     235   393 ..     1   185 []   143.1  2.9e-38

Alignments of top-scoring domains:
SM00214: domain 1 of 3, from 46 to 104: score 49.0, E = 6.3e-10
                   *->CvhpnGevyrdgetWkpdk.pCqiCtCldgekvlCdkveCppppslp
                      Cv+  G++y++ge+++p+ ++C++C C++g  ++C    Cp      
    KIAA1965    46    CVF-EGVQYQEGEEFQPEGsKCTKCSCTGG-RTQCVREVCPIL---- 86   

                   ckdsdCpnperlpavaekppGeCCpeyrC<-*
                       +Cp+         +ppG+CCp  +C   
    KIAA1965    87 ----SCPQH-----LSHIPPGQCCP--KC    104  

SM00214: domain 2 of 3, from 118 to 169: score 21.8, E = 0.085
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C++   +vy +g ++  d  C+ CtC d+ +v+C+ + C  p     
    KIAA1965   118    CLF-RSDVYDNGSSFLYD-NCTACTCRDS-TVVCKRK-CSHP----- 155  

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                     ++C ++             CC+   C   
    KIAA1965   156 --GGCDQG----------QEGCCE--EC    169  

SM00214: domain 3 of 3, from 181 to 237: score 35.4, E = 7.8e-06
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C + +  +++dge+W +   C+iC C  g  + C+ ++C p      
    KIAA1965   181    CKF-GNKIFQDGEMWSSI-NCTICACVKG-RTECRNKQCIPIS---- 220  

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                      +Cp++      +  + + CCp  +C   
    KIAA1965   221 ---SCPQG------KILNRKGCCP--IC    237  

SM00216: domain 1 of 1, from 235 to 393: score 143.1, E = 2.9e-38
                   *->wsctqeecagratCsvsGdphytTFDGlkYtfpmpGnCyYvLaqdyP
                      + ct+++     +C+v+Gdphy+TFDG++++f  +G+C+YvL +d  
    KIAA1965   235    PICTEKPG----VCTVFGDPHYNTFDGRTFNF--QGTCQYVLTKD-- 273  

                   GsCssepsegsFsVllknvpcggsgktdklatclksvkvelgdieielk.
                     Css  s  +F Vl+kn+ + +++      +++ksv + lg++ + l++
    KIAA1965   274 --CSSPAS--PFQVLVKNDARRTRS-----FSWTKSVELVLGESRVSLQq 314  

                   ggkvtvngqrtpkvslPyktsdgsirierrsagggylvvitslglrvqvt
                     +v+ ng+r   + lP   +   i        g++l v t  g  +++ 
    KIAA1965   315 HLTVRWNGSR---IALPCRAPHFHIDLD-----GYLLKVTTKAG--LEIS 354  

                   fDgktllsvqlpssyrgkTcGLCGnfdgepeDDfrtpdG<-*
                   +Dg +++ v   +  +gk+cGLCGn++g ++DD+   dG   
    KIAA1965   355 WDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDG    393  

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