hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17495829/chunk_1/iprscan-20080502-17495829.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1965 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00094.15.fs von Willebrand factor type D domain 144.3 4.7e-43 1 PF00093.8.fs von Willebrand factor type C domain 144.4 8.1e-41 4 PF00094.15.ls von Willebrand factor type D domain 146.2 8.3e-41 1 PF00093.8.ls von Willebrand factor type C domain 141.8 1.7e-39 3 PF08742.1.fs Domain of unknown function (DUF1787) 96.8 5e-34 1 PF08742.1.ls Domain of unknown function (DUF1787) 98.7 1.6e-26 1 PF01826.8.fs Trypsin Inhibitor like cysteine rich domain 33.9 2.3e-10 2 PF01826.8.ls Trypsin Inhibitor like cysteine rich domain 32.9 1.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00093.8.ls 1/3 46 104 .. 1 84 [] 59.7 9e-15 PF00093.8.fs 2/4 46 104 .. 1 84 [] 58.0 4.8e-16 PF00093.8.ls 2/3 118 169 .. 1 84 [] 30.3 6.5e-06 PF00093.8.fs 3/4 118 169 .. 1 84 [] 28.7 1.2e-07 PF00093.8.fs 4/4 181 237 .. 1 84 [] 50.2 8.2e-14 PF00093.8.ls 3/3 181 237 .. 1 84 [] 51.9 2e-12 PF00094.15.ls 1/1 244 394 .. 1 167 [] 146.2 8.3e-41 PF00094.15.fs 1/1 244 394 .. 1 167 [] 144.3 4.7e-43 PF08742.1.fs 1/1 433 505 .. 1 81 [] 96.8 5e-34 PF08742.1.ls 1/1 433 505 .. 1 81 [] 98.7 1.6e-26 PF01826.8.ls 1/1 509 562 .. 1 68 [] 32.9 1.1e-06 PF01826.8.fs 2/2 509 562 .. 1 68 [] 31.1 1.8e-09 Alignments of top-scoring domains: PF00093.8.ls: domain 1 of 3, from 46 to 104: score 59.7, E = 9e-15 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC Cv+ Gv+Y++ge+++p+ kCt +C+C+ g+++C KIAA1965 46 CVFEGVQYQEGEEFQPEG-----SKCT-KCSCTG--------GRTQC 78 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* + +Cp l+Cp+ + ippG+CCp C KIAA1965 79 VREVCPI-----LSCPQHL----SHIPPGQCCP--KC 104 PF00093.8.fs: domain 2 of 4, from 46 to 104: score 58.0, E = 4.8e-16 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC Cv+ Gv+Y++ge+++p+ kCt +C+C+ g+++C KIAA1965 46 CVFEGVQYQEGEEFQPEG-----SKCT-KCSCTG--------GRTQC 78 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* + +Cp l+Cp+ + ippG+CCp C KIAA1965 79 VREVCPI-----LSCPQHL----SHIPPGQCCP--KC 104 PF00093.8.ls: domain 2 of 3, from 118 to 169: score 30.3, E = 6.5e-06 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC C++++ vY ng ++ d Ct CtC+d + v+C KIAA1965 118 CLFRSDVYDNGSSFLYDN-------CT-ACTCRD--------STVVC 148 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* +++ C+ + C+++ CC+ +C KIAA1965 149 KRK-CSH----PGGCDQG---------QEGCCE--EC 169 PF00093.8.fs: domain 3 of 4, from 118 to 169: score 28.7, E = 1.2e-07 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC C++++ vY ng ++ d Ct CtC+d + v+C KIAA1965 118 CLFRSDVYDNGSSFLYDN-------CT-ACTCRD--------STVVC 148 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* +++ C+ + C+++ CC+ +C KIAA1965 149 KRK-CSH----PGGCDQG---------QEGCCE--EC 169 PF00093.8.fs: domain 4 of 4, from 181 to 237: score 50.2, E = 8.2e-14 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC C+++++++++ge W + Ct iC C + g+++C KIAA1965 181 CKFGNKIFQDGEMWSSIN-------CT-ICACVK--------GRTEC 211 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* +++ C p ++Cp++ ++ + + CCp +C KIAA1965 212 RNKQCIPI----SSCPQG-----KILNRKGCCP--IC 237 PF00093.8.ls: domain 3 of 3, from 181 to 237: score 51.9, E = 2e-12 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC C+++++++++ge W + Ct iC C + g+++C KIAA1965 181 CKFGNKIFQDGEMWSSIN-------CT-ICACVK--------GRTEC 211 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* +++ C p ++Cp++ ++ + + CCp +C KIAA1965 212 RNKQCIPI----SSCPQG-----KILNRKGCCP--IC 237 PF00094.15.ls: domain 1 of 1, from 244 to 394: score 146.2, E = 8.3e-41 *->CsvsGdphytTFDGvsYtfpgnCsYvlvlaqdcssesdffkfsvlnk C+v+Gdphy+TFDG++++f+g+C+Yv l++dcss f vl+k KIAA1965 244 CTVFGDPHYNTFDGRTFNFQGTCQYV--LTKDCSSPA--SPFQVLVK 286 nvrcgss.vtclksvtvilgnveieltpgnadkdqvkVlvNgqevslslP n+ ++ + +++ksv ++lg+ ++l+ ++V Ng ++ l P KIAA1965 287 NDARRTRsFSWTKSVELVLGESRVSLQQH------LTVRWNGSRIAL--P 328 yssdngseikilgsgfllvalprlgvtlqfdwdgrtrlfvslspsyrgkt + + +i+ g l v++ g+++++d+d+ ++ v++ p ++gk+ KIAA1965 329 CRAPHF-HIDLDGYL-LKVTT-KAGLEISWDGDS--FVEVMAAPHLKGKL 373 cGLCGnfngepedDfrtpdGs<-* cGLCGn+ng ++dD+ dG KIAA1965 374 CGLCGNYNGHKRDDLIGGDGN 394 PF00094.15.fs: domain 1 of 1, from 244 to 394: score 144.3, E = 4.7e-43 *->CsvsGdphytTFDGvsYtfpgnCsYvlvlaqdcssesdffkfsvlnk C+v+Gdphy+TFDG++++f+g+C+Yv l++dcss f vl+k KIAA1965 244 CTVFGDPHYNTFDGRTFNFQGTCQYV--LTKDCSSPA--SPFQVLVK 286 nvrcgss.vtclksvtvilgnveieltpgnadkdqvkVlvNgqevslslP n+ ++ + +++ksv ++lg+ ++l+ ++V Ng ++ l P KIAA1965 287 NDARRTRsFSWTKSVELVLGESRVSLQQH------LTVRWNGSRIAL--P 328 yssdngseikilgsgfllvalprlgvtlqfdwdgrtrlfvslspsyrgkt + + +i+ g l v++ g+++++d+d+ ++ v++ p ++gk+ KIAA1965 329 CRAPHF-HIDLDGYL-LKVTT-KAGLEISWDGDS--FVEVMAAPHLKGKL 373 cGLCGnfngepedDfrtpdGs<-* cGLCGn+ng ++dD+ dG KIAA1965 374 CGLCGNYNGHKRDDLIGGDGN 394 PF08742.1.fs: domain 1 of 1, from 433 to 505: score 96.8, E = 5e-34 *->eykaeeaCgiLlespvGPFaeCHsvVdPepfyeaCvyDlCacggggg + +a++ C++L+ s+ F++CHs+Vd++ fy++Cv D+C+c+ + KIAA1965 433 KLRAHRECQKLK-SWE--FQTCHSTVDYATFYRSCVTDMCECPVH-- 474 deeclCsaLaaYAraCaaaGvcvdgWRtpttfCp<-* +c C+++ aY+raC+++G++v+ W + ++C+ KIAA1965 475 -KNCYCESFLAYTRACQREGIKVH-WEPQ-QNCA 505 PF08742.1.ls: domain 1 of 1, from 433 to 505: score 98.7, E = 1.6e-26 *->eykaeeaCgiLlespvGPFaeCHsvVdPepfyeaCvyDlCacggggg + +a++ C++L+ s+ F++CHs+Vd++ fy++Cv D+C+c+ + KIAA1965 433 KLRAHRECQKLK-SWE--FQTCHSTVDYATFYRSCVTDMCECPVH-- 474 deeclCsaLaaYAraCaaaGvcvdgWRtpttfCp<-* +c C+++ aY+raC+++G++v+ W + ++C+ KIAA1965 475 -KNCYCESFLAYTRACQREGIKVH-WEPQ-QNCA 505 PF01826.8.ls: domain 1 of 1, from 509 to 562: score 32.9, E = 1.1e-06 *->CPaneqyteCgpsCepsCsnpdgplettppCegtSpkvPstCkegvC C +y +Cgp C +C+n ++ pC ++C+ g C KIAA1965 509 CKHGAVYDTCGPGCIKTCDNWNE----IGPCN-------KPCVAG-C 543 vCqpGyVrnndgdkCVprseC<-* C+ V+++ +C+++ C KIAA1965 544 HCPANLVLHKG--RCIKPVLC 562 PF01826.8.fs: domain 2 of 2, from 509 to 562: score 31.1, E = 1.8e-09 *->CPaneqyteCgpsCepsCsnpdgplettppCegtSpkvPstCkegvC C +y +Cgp C +C+n ++ pC ++C+ g C KIAA1965 509 CKHGAVYDTCGPGCIKTCDNWNE----IGPCN-------KPCVAG-C 543 vCqpGyVrnndgdkCVprseC<-* C+ V+++ +C+++ C KIAA1965 544 HCPANLVLHKG--RCIKPVLC 562 //