hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17445230/chunk_1/iprscan-20080502-17445230.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1962 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 302.2 3.7e-86 11 SM00431 209.9 2.3e-58 1 SM00349 80.2 2.5e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00431 1/1 50 158 .. 1 113 [] 209.9 2.3e-58 SM00349 1/1 172 232 .. 1 62 [] 80.2 2.5e-19 SM00355 1/11 441 463 .. 1 23 [] 27.1 0.0025 SM00355 2/11 469 491 .. 1 23 [] 25.1 0.0096 SM00355 3/11 497 519 .. 1 23 [] 27.2 0.0022 SM00355 4/11 525 547 .. 1 23 [] 29.6 0.00042 SM00355 5/11 553 575 .. 1 23 [] 29.8 0.00037 SM00355 6/11 581 603 .. 1 23 [] 28.1 0.0013 SM00355 7/11 609 631 .. 1 23 [] 21.5 0.12 SM00355 8/11 637 659 .. 1 23 [] 29.1 0.00063 SM00355 9/11 665 687 .. 1 23 [] 31.6 0.0001 SM00355 10/11 693 715 .. 1 23 [] 28.1 0.0012 SM00355 11/11 721 743 .. 1 23 [] 25.1 0.01 Alignments of top-scoring domains: SM00431: domain 1 of 1, from 50 to 158: score 209.9, E = 2.3e-58 *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL E fRqrFR F+Y E++GPR ALS+L+ELC qWLRP++hTKEQILEL KIAA1962 50 AESFRQRFRWFCYSEVAGPRKALSQLWELCNQWLRPDIHTKEQILEL 96 LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah LV EQFLTILPgE++ WV+ +hPeS+EE+VtL+EdL + L+e KIAA1962 97 LVFEQFLTILPGEIRIWVKSQHPESSEEVVTLIEDLTQMLEEKD----PV 142 vhgqevLleemvplga<-* ++ v++ee++ +++ KIAA1962 143 SQDSTVSQEENSKEDK 158 SM00349: domain 1 of 1, from 172 to 232: score 80.2, E = 2.5e-19 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk t++DVAV Fs+ EW++L+p Q++LY++V lEN +nL +L+ f+vsk KIAA1962 172 ITLKDVAVNFSRGEWKKLEPFQKELYKEVLLENLRNLEFLD-FPVSK 217 pdliskLEqgeEpwi<-* +lis+L e pw KIAA1962 218 LELISQLKWVELPWL 232 SM00355: domain 1 of 11, from 441 to 463: score 27.1, E = 0.0025 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f +L++H r+H KIAA1962 441 HKCSK-CGKAFGYSaSLTKHRRIH 463 SM00355: domain 2 of 11, from 469 to 491: score 25.1, E = 0.0096 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk fs+ ++L+ H r+H KIAA1962 469 YMCNE-CGKAFSDSsSLTPHHRTH 491 SM00355: domain 3 of 11, from 497 to 519: score 27.2, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ Cgk f+ +L++H+r+H KIAA1962 497 FKCDD-CGKGFTLSaHLIKHQRIH 519 SM00355: domain 4 of 11, from 525 to 547: score 29.6, E = 0.00042 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cg+ fs+ ++L++H+r+H KIAA1962 525 YKCKD-CGRPFSDSsSLIQHQRIH 547 SM00355: domain 5 of 11, from 553 to 575: score 29.8, E = 0.00037 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgksfs+ ++L +H+r+H KIAA1962 553 YTCSN-CGKSFSHSsSLSKHQRIH 575 SM00355: domain 6 of 11, from 581 to 603: score 28.1, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk f++ + L+rH+r+H KIAA1962 581 YKCGE-CGKAFRQNsCLTRHQRIH 603 SM00355: domain 7 of 11, from 609 to 631: score 21.5, E = 0.12 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+ Cg++fs+ ++ + H+r H KIAA1962 609 YLCND-CGMTFSHFtSVIYHQRLH 631 SM00355: domain 8 of 11, from 637 to 659: score 29.1, E = 0.00063 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k f++++ L rH+r+H KIAA1962 637 YKCNQ-CEKAFPTHsLLSRHQRIH 659 SM00355: domain 9 of 11, from 665 to 687: score 31.6, E = 0.0001 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksfs+ ++L++H r+H KIAA1962 665 YKCKE-CGKSFSQSsSLNEHHRIH 687 SM00355: domain 10 of 11, from 693 to 715: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg +fs+ + L++H+++H KIAA1962 693 YECNY-CGATFSRSsILVEHLKIH 715 SM00355: domain 11 of 11, from 721 to 743: score 25.1, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k+f+s + L+rH H KIAA1962 721 YECNE-CEKTFKSNsGLIRHRGFH 743 //