hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17395161/chunk_1/iprscan-20080502-17395161.nocrc
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Query sequence: KIAA1959
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00326                                                  49.6    4.1e-10   1
SM00165                                                  30.0    0.00033   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00165    1/1      38    76 ..     1    38 []    30.0  0.00033
SM00326    1/1     258   319 ..     1    58 []    49.6  4.1e-10

Alignments of top-scoring domains:
SM00165: domain 1 of 1, from 38 to 76: score 30.0, E = 0.00033
                   *->deekieqLleMGFsreeavdALratngN.verAaeyLls<-*
                        ++++ Ll+MGF+r +a++AL +t+g +v++A ++L+s   
    KIAA1959    38    HGSALDVLLSMGFPRARAQKALASTGGRsVQAACDWLFS    76   

SM00326: domain 1 of 1, from 258 to 319: score 49.6, E = 4.1e-10
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks....ddgWweGelnrt
                      e+ +++Y+y++qn+dEL + +GD i     +++++++gW +G+  +t
    KIAA1959   258    ETLQVIYPYTPQNDDELELVPGDFIFMSPMEqtstSEGWIYGTSLTT 304  

                   GkeGlfPsnYVeeie<-*
                   G  Gl P nY+++ +   
    KIAA1959   305 GCSGLLPENYITKAD    319  

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