# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh03965.fasta.huge -Q ../query/KIAA1959.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1959, 650 aa vs ./tmplib.25089 library 1986855 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.9198+/-0.00461; mu= 14.3145+/- 0.314 mean_var=79.1677+/-18.972, 0's: 0 Z-trim: 4 B-trim: 5 in 1/39 Lambda= 0.144145 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1296 ( 815 res) fg03576 ( 815) 154 42.0 0.00024 KIAA0777 ( 1171 res) hk05279 (1171) 150 41.4 0.00055 KIAA1494 ( 638 res) fj08673 ( 638) 144 39.9 0.00085 >>KIAA1296 ( 815 res) fg03576 (815 aa) initn: 157 init1: 78 opt: 154 Z-score: 169.9 bits: 42.0 E(): 0.00024 Smith-Waterman score: 154; 45.614% identity (66.667% similar) in 57 aa overlap (259-315:758-810) 230 240 250 260 270 280 KIAA19 EKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPME . :..: : ::::::::: ::.. . :: KIAA12 SRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELELRDGDIV--DVME 730 740 750 760 770 780 290 300 310 320 330 340 KIAA19 QTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVL . . .::. ::: : : .: ::. KIAA12 KCD--DGWFVGTSRRTKQFGTFPGNYVKPLYL 790 800 810 >>KIAA0777 ( 1171 res) hk05279 (1171 aa) initn: 127 init1: 71 opt: 150 Z-score: 163.4 bits: 41.4 E(): 0.00055 Smith-Waterman score: 150; 38.028% identity (66.197% similar) in 71 aa overlap (247-317:1104-1170) 220 230 240 250 260 270 KIAA19 AYHFQASHLPTLEKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYTPQNDDELEL .:... .. : .:..: :::.:.::::: KIAA07 GAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELEL 1080 1090 1100 1110 1120 1130 280 290 300 310 320 330 KIAA19 VPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTS .: : . ::. ..::. ::: : : .: ::. . KIAA07 RESDVI--DVMEKC--DDGWFVGTSRRTKFFGTFPGNYVKRL 1140 1150 1160 1170 340 350 360 370 380 390 KIAA19 SSNSLTFGDGVLERRPYEDQGLGETTPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERM >>KIAA1494 ( 638 res) fj08673 (638 aa) initn: 201 init1: 89 opt: 144 Z-score: 160.0 bits: 39.9 E(): 0.00085 Smith-Waterman score: 145; 28.283% identity (60.606% similar) in 99 aa overlap (217-315:544-635) 190 200 210 220 230 240 KIAA19 KKFAADFAAEAASKTEVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQNIDVKLGCDWVAT :.: .:: : . .: . .:. .. KIAA14 GGGHGRAGSCPVDGDGPVTTAVAGAALAQDAFHRKASSLDSAVPIAP--PPRQACSSLGP 520 530 540 550 560 570 250 260 270 280 290 300 KIAA19 IFSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC ..... : . : .:. : ::.. :::: ::..:. . . .::. :: .: KIAA14 VLNES-RPVVCERHRVVVSYPPQSEAELELKEGDIVFV----HKKREDGWFKGTLQRNGK 580 590 600 610 620 310 320 330 340 350 360 KIAA19 SGLLPENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVLERRPYEDQGLGETTPLTI .::.: ... KIAA14 TGLFPGSFVENI 630 650 residues in 1 query sequences 1986855 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:35 2008 done: Thu Dec 18 15:23:36 2008 Total Scan time: 0.510 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]