hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17344453/chunk_1/iprscan-20080502-17344453.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1956 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 467.4 7.2e-136 17 SM00349 61.8 8.5e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 9 62 .. 1 62 [] 61.8 8.5e-14 SM00355 1/17 86 108 .. 1 23 [] 16.8 3.1 SM00355 2/17 234 256 .. 1 23 [] 18.2 1.2 SM00355 3/17 262 284 .. 1 23 [] 32.3 6.5e-05 SM00355 4/17 290 312 .. 1 23 [] 32.3 6.5e-05 SM00355 5/17 318 340 .. 1 23 [] 29.9 0.00036 SM00355 6/17 346 368 .. 1 23 [] 30.2 0.00028 SM00355 7/17 374 396 .. 1 23 [] 29.1 0.00061 SM00355 8/17 402 424 .. 1 23 [] 30.3 0.00026 SM00355 9/17 430 452 .. 1 23 [] 32.1 7.5e-05 SM00355 10/17 458 480 .. 1 23 [] 25.9 0.0055 SM00355 11/17 486 508 .. 1 23 [] 30.0 0.00032 SM00355 12/17 514 536 .. 1 23 [] 30.0 0.00034 SM00355 13/17 542 564 .. 1 23 [] 29.6 0.00044 SM00355 14/17 570 589 .. 1 23 [] 13.9 8.6 SM00355 15/17 595 617 .. 1 23 [] 26.1 0.0049 SM00355 16/17 623 645 .. 1 23 [] 28.8 0.00077 SM00355 17/17 651 673 .. 1 23 [] 31.9 8.9e-05 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 9 to 62: score 61.8, E = 8.5e-14 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk V+FeDVAV FsqEEW +L Qr LY dVMlEN+ SLG + s KIAA1956 9 VAFEDVAVNFSQEEWSLLSEVQRCLYHDVMLENWVLISSLGCWCGS- 54 pdliskLEqgeEpwi<-* E +e p KIAA1956 55 -------EDEEAPSK 62 SM00355: domain 1 of 17, from 86 to 108: score 16.8, E = 3.1 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg + +L H+ +H KIAA1956 86 HSCEM-CGAILGDIlHLADHQGTH 108 SM00355: domain 2 of 17, from 234 to 256: score 18.2, E = 1.2 *->ykCpigCgksfssk.aLkrHmrvH<-* C + Cgksfs +++ +H+rvH KIAA1956 234 CYCWE-CGKSFSKYdSVSNHQRVH 256 SM00355: domain 3 of 17, from 262 to 284: score 32.3, E = 6.5e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksfs+k++L++H+rvH KIAA1956 262 YECGE-CGKSFSHKgSLVQHQRVH 284 SM00355: domain 4 of 17, from 290 to 312: score 32.3, E = 6.5e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksfs+k++L++H+rvH KIAA1956 290 YECGE-CGKSFSHKgSLVQHQRVH 312 SM00355: domain 5 of 17, from 318 to 340: score 29.9, E = 0.00036 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksfs+ + L++H+rvH KIAA1956 318 YECGE-CGKSFSQNgTLIKHQRVH 340 SM00355: domain 6 of 17, from 346 to 368: score 30.2, E = 0.00028 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f++k++L++H+r H KIAA1956 346 YECEE-CGKCFTQKgNLIQHQRGH 368 SM00355: domain 7 of 17, from 374 to 396: score 29.1, E = 0.00061 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+k+ L++H rvH KIAA1956 374 YECEE-CGKCFSQKgTLTEHHRVH 396 SM00355: domain 8 of 17, from 402 to 424: score 30.3, E = 0.00026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksfs+k++L++H+r H KIAA1956 402 YECGE-CGKSFSRKgHLRNHQRGH 424 SM00355: domain 9 of 17, from 430 to 452: score 32.1, E = 7.5e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksfs+k++L++H+r+H KIAA1956 430 YECGE-CGKSFSRKgNLIQHQRSH 452 SM00355: domain 10 of 17, from 458 to 480: score 25.9, E = 0.0055 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + C k f+ k++L++H+rvH KIAA1956 458 YECRE-CRKLFRGKsHLIEHQRVH 480 SM00355: domain 11 of 17, from 486 to 508: score 30.0, E = 0.00032 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf + + ++ H+rvH KIAA1956 486 YECNE-CGKSFQDSsGFRVHQRVH 508 SM00355: domain 12 of 17, from 514 to 536: score 30.0, E = 0.00034 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgksf++ +L rH rvH KIAA1956 514 FECSE-CGKSFPQScSLLRHRRVH 536 SM00355: domain 13 of 17, from 542 to 564: score 29.6, E = 0.00044 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf++ ++L rH+++H KIAA1956 542 YECGE-CGKSFHQSsSLLRHQKTH 564 SM00355: domain 14 of 17, from 570 to 589: score 13.9, E = 8.6 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk ++L +H rvH KIAA1956 570 YECRE-CGKF---FsSLLEHRRVH 589 SM00355: domain 15 of 17, from 595 to 617: score 26.1, E = 0.0049 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f++++a +H+r H KIAA1956 595 YECRE-CGKTFTRRsAHFKHQRLH 617 SM00355: domain 16 of 17, from 623 to 645: score 28.8, E = 0.00077 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf +L++H rvH KIAA1956 623 YECSE-CGKSFAETfSLTEHRRVH 645 SM00355: domain 17 of 17, from 651 to 673: score 31.9, E = 8.9e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf++ ++L rH+rvH KIAA1956 651 YECSE-CGKSFHRSsSLLRHQRVH 673 //