hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17344453/chunk_1/iprscan-20080502-17344453.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1956 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 537.3 1.5e-158 17 PF00096.16.fs Zinc finger, C2H2 type 504.0 1.6e-148 17 PF01286.9.fs XPA protein N-terminal 80.0 4.7e-22 14 PF01352.17.fs KRAB box 76.3 5.2e-21 1 PF01352.17.ls KRAB box 78.3 2.3e-20 1 PF01096.9.fs Transcription factor S-II (TFIIS) 46.6 1e-13 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 9 49 .. 1 41 [] 76.3 5.2e-21 PF01352.17.ls 1/1 9 49 .. 1 41 [] 78.3 2.3e-20 PF00096.16.ls 2/17 234 256 .. 1 24 [] 23.7 0.00063 PF00096.16.fs 3/17 262 284 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 3/17 262 284 .. 1 24 [] 37.1 5.6e-08 PF00096.16.fs 4/17 290 312 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 4/17 290 312 .. 1 24 [] 37.1 5.6e-08 PF00096.16.fs 5/17 318 340 .. 1 24 [] 36.2 9.1e-08 PF00096.16.ls 5/17 318 340 .. 1 24 [] 38.2 2.7e-08 PF00096.16.fs 6/17 346 368 .. 1 24 [] 36.0 1e-07 PF00096.16.ls 6/17 346 368 .. 1 24 [] 37.9 3.1e-08 PF00096.16.fs 7/17 374 396 .. 1 24 [] 32.5 7.4e-07 PF00096.16.ls 7/17 374 396 .. 1 24 [] 34.5 3.4e-07 PF00096.16.ls 8/17 402 424 .. 1 24 [] 38.1 2.8e-08 PF00096.16.fs 8/17 402 424 .. 1 24 [] 36.2 9.3e-08 PF00096.16.ls 9/17 430 452 .. 1 24 [] 40.1 7e-09 PF00096.16.fs 9/17 430 452 .. 1 24 [] 38.1 2.7e-08 PF00096.16.ls 10/17 458 480 .. 1 24 [] 27.8 3.5e-05 PF00096.16.fs 10/17 458 480 .. 1 24 [] 25.9 3.4e-05 PF00096.16.fs 11/17 486 508 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 11/17 486 508 .. 1 24 [] 33.1 8.8e-07 PF00096.16.ls 12/17 514 536 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 12/17 514 536 .. 1 24 [] 30.1 3e-06 PF00096.16.ls 13/17 542 564 .. 1 24 [] 35.2 2.1e-07 PF00096.16.fs 13/17 542 564 .. 1 24 [] 33.2 5e-07 PF00096.16.ls 14/17 570 589 .. 1 24 [] 19.1 0.015 PF00096.16.ls 15/17 595 617 .. 1 24 [] 26.3 0.0001 PF00096.16.fs 15/17 595 617 .. 1 24 [] 24.3 8.2e-05 PF00096.16.fs 16/17 623 645 .. 1 24 [] 28.3 8.2e-06 PF00096.16.ls 16/17 623 645 .. 1 24 [] 30.3 6.2e-06 PF00096.16.fs 17/17 651 673 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 17/17 651 673 .. 1 24 [] 36.1 1.1e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 9 to 49: score 76.3, E = 5.2e-21 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+FeDVaV+F+qEEW lL++ Qr+LY+dVMlEN+ + Slg KIAA1956 9 VAFEDVAVNFSQEEWSLLSEVQRCLYHDVMLENWVLISSLG 49 PF01352.17.ls: domain 1 of 1, from 9 to 49: score 78.3, E = 2.3e-20 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+FeDVaV+F+qEEW lL++ Qr+LY+dVMlEN+ + Slg KIAA1956 9 VAFEDVAVNFSQEEWSLLSEVQRCLYHDVMLENWVLISSLG 49 PF00096.16.ls: domain 2 of 17, from 234 to 256: score 23.7, E = 0.00063 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +CgksFs ++ +H+r+H KIAA1956 234 CYCW-ECGKSFSKYDSVSNHQRVH 256 PF00096.16.fs: domain 3 of 17, from 262 to 284: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs+k++L +H+r+H KIAA1956 262 YECG-ECGKSFSHKGSLVQHQRVH 284 PF00096.16.ls: domain 3 of 17, from 262 to 284: score 37.1, E = 5.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs+k++L +H+r+H KIAA1956 262 YECG-ECGKSFSHKGSLVQHQRVH 284 PF00096.16.fs: domain 4 of 17, from 290 to 312: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs+k++L +H+r+H KIAA1956 290 YECG-ECGKSFSHKGSLVQHQRVH 312 PF00096.16.ls: domain 4 of 17, from 290 to 312: score 37.1, E = 5.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs+k++L +H+r+H KIAA1956 290 YECG-ECGKSFSHKGSLVQHQRVH 312 PF00096.16.fs: domain 5 of 17, from 318 to 340: score 36.2, E = 9.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs++++L +H+r+H KIAA1956 318 YECG-ECGKSFSQNGTLIKHQRVH 340 PF00096.16.ls: domain 5 of 17, from 318 to 340: score 38.2, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs++++L +H+r+H KIAA1956 318 YECG-ECGKSFSQNGTLIKHQRVH 340 PF00096.16.fs: domain 6 of 17, from 346 to 368: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++k+nL +H+r H KIAA1956 346 YECE-ECGKCFTQKGNLIQHQRGH 368 PF00096.16.ls: domain 6 of 17, from 346 to 368: score 37.9, E = 3.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++k+nL +H+r H KIAA1956 346 YECE-ECGKCFTQKGNLIQHQRGH 368 PF00096.16.fs: domain 7 of 17, from 374 to 396: score 32.5, E = 7.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+k++L+ H r+H KIAA1956 374 YECE-ECGKCFSQKGTLTEHHRVH 396 PF00096.16.ls: domain 7 of 17, from 374 to 396: score 34.5, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+k++L+ H r+H KIAA1956 374 YECE-ECGKCFSQKGTLTEHHRVH 396 PF00096.16.ls: domain 8 of 17, from 402 to 424: score 38.1, E = 2.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFsrk++L++H+r H KIAA1956 402 YECG-ECGKSFSRKGHLRNHQRGH 424 PF00096.16.fs: domain 8 of 17, from 402 to 424: score 36.2, E = 9.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFsrk++L++H+r H KIAA1956 402 YECG-ECGKSFSRKGHLRNHQRGH 424 PF00096.16.ls: domain 9 of 17, from 430 to 452: score 40.1, E = 7e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFsrk+nL +H+r+H KIAA1956 430 YECG-ECGKSFSRKGNLIQHQRSH 452 PF00096.16.fs: domain 9 of 17, from 430 to 452: score 38.1, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFsrk+nL +H+r+H KIAA1956 430 YECG-ECGKSFSRKGNLIQHQRSH 452 PF00096.16.ls: domain 10 of 17, from 458 to 480: score 27.8, E = 3.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k F+ ks+L H+r+H KIAA1956 458 YECR-ECRKLFRGKSHLIEHQRVH 480 PF00096.16.fs: domain 10 of 17, from 458 to 480: score 25.9, E = 3.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k F+ ks+L H+r+H KIAA1956 458 YECR-ECRKLFRGKSHLIEHQRVH 480 PF00096.16.fs: domain 11 of 17, from 486 to 508: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s ++ H+r+H KIAA1956 486 YECN-ECGKSFQDSSGFRVHQRVH 508 PF00096.16.ls: domain 11 of 17, from 486 to 508: score 33.1, E = 8.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s ++ H+r+H KIAA1956 486 YECN-ECGKSFQDSSGFRVHQRVH 508 PF00096.16.ls: domain 12 of 17, from 514 to 536: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF ++ +L rH+r+H KIAA1956 514 FECS-ECGKSFPQSCSLLRHRRVH 536 PF00096.16.fs: domain 12 of 17, from 514 to 536: score 30.1, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF ++ +L rH+r+H KIAA1956 514 FECS-ECGKSFPQSCSLLRHRRVH 536 PF00096.16.ls: domain 13 of 17, from 542 to 564: score 35.2, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF ++s+L rH++tH KIAA1956 542 YECG-ECGKSFHQSSSLLRHQKTH 564 PF00096.16.fs: domain 13 of 17, from 542 to 564: score 33.2, E = 5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF ++s+L rH++tH KIAA1956 542 YECG-ECGKSFHQSSSLLRHQKTH 564 PF00096.16.ls: domain 14 of 17, from 570 to 589: score 19.1, E = 0.015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F s+L H+r+H KIAA1956 570 YECR-ECGKFF---SSLLEHRRVH 589 PF00096.16.ls: domain 15 of 17, from 595 to 617: score 26.3, E = 0.0001 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+r+s +H+r H KIAA1956 595 YECR-ECGKTFTRRSAHFKHQRLH 617 PF00096.16.fs: domain 15 of 17, from 595 to 617: score 24.3, E = 8.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+r+s +H+r H KIAA1956 595 YECR-ECGKTFTRRSAHFKHQRLH 617 PF00096.16.fs: domain 16 of 17, from 623 to 645: score 28.3, E = 8.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF +L+ H+r+H KIAA1956 623 YECS-ECGKSFAETFSLTEHRRVH 645 PF00096.16.ls: domain 16 of 17, from 623 to 645: score 30.3, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF +L+ H+r+H KIAA1956 623 YECS-ECGKSFAETFSLTEHRRVH 645 PF00096.16.fs: domain 17 of 17, from 651 to 673: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF r+s+L rH+r+H KIAA1956 651 YECS-ECGKSFHRSSSLLRHQRVH 673 PF00096.16.ls: domain 17 of 17, from 651 to 673: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF r+s+L rH+r+H KIAA1956 651 YECS-ECGKSFHRSSSLLRHQRVH 673 //