hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17311975/chunk_1/iprscan-20080502-17311975.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1954
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 363.2   1.6e-104  13

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/13     43    65 ..     1    23 []    26.3   0.0044
SM00355      2/13     86   108 ..     1    23 []    28.7  0.00081
SM00355      3/13    114   136 ..     1    23 []    22.9    0.044
SM00355      4/13    142   164 ..     1    23 []    31.3  0.00013
SM00355      5/13    170   192 ..     1    23 []    26.0   0.0052
SM00355      6/13    198   220 ..     1    23 []    26.5   0.0037
SM00355      7/13    226   248 ..     1    23 []    30.8  0.00018
SM00355      8/13    282   304 ..     1    23 []    24.6    0.014
SM00355      9/13    329   351 ..     1    23 []    29.6  0.00042
SM00355     10/13    357   379 ..     1    23 []    30.6  0.00021
SM00355     11/13    385   407 ..     1    23 []    27.8   0.0015
SM00355     12/13    413   435 ..     1    23 []    27.9   0.0014
SM00355     13/13    441   463 ..     1    23 []    30.0  0.00033

Alignments of top-scoring domains:
SM00355: domain 1 of 13, from 43 to 65: score 26.3, E = 0.0044
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C k f ++++L++H ++H   
    KIAA1954    43    YKCDK-CRKAFIHRsSLTKHEKTH    65   

SM00355: domain 2 of 13, from 86 to 108: score 28.7, E = 0.00081
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  Cgk+f +k++L++H+r+H   
    KIAA1954    86    HECTD-CGKTFLWKtQLTEHQRIH    108  

SM00355: domain 3 of 13, from 114 to 136: score 22.9, E = 0.044
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk f++ ++L +H   H   
    KIAA1954   114    FECNV-CGKAFRHSsSLGQHENAH    136  

SM00355: domain 4 of 13, from 142 to 164: score 31.3, E = 0.00013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f + ++L++H+r+H   
    KIAA1954   142    YQCSL-CGKAFQRSsSLVQHQRIH    164  

SM00355: domain 5 of 13, from 170 to 192: score 26.0, E = 0.0052
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+sf++ ++L++H  +H   
    KIAA1954   170    YRCNL-CGRSFRHGtSLTQHEVTH    192  

SM00355: domain 6 of 13, from 198 to 220: score 26.5, E = 0.0037
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs+ ++L++H r+H   
    KIAA1954   198    FQCKE-CGKAFSRCsSLVQHERTH    220  

SM00355: domain 7 of 13, from 226 to 248: score 30.8, E = 0.00018
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i Cg+ f + ++L +Hmr+H   
    KIAA1954   226    FECSI-CGRAFGQSpSLYKHMRIH    248  

SM00355: domain 8 of 13, from 282 to 304: score 24.6, E = 0.014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cg+ fs+ ++++ H+r+H   
    KIAA1954   282    YHCND-CGEDFSHItDFTDHQRIH    304  

SM00355: domain 9 of 13, from 329 to 351: score 29.6, E = 0.00042
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ +++++H r+H   
    KIAA1954   329    YQCNV-CGKAFKRStSFIEHHRIH    351  

SM00355: domain 10 of 13, from 357 to 379: score 30.6, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ fs++++L++H r+H   
    KIAA1954   357    YECNE-CGEAFSRRsSLTQHERTH    379  

SM00355: domain 11 of 13, from 385 to 407: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   Cgk fs+ ++L++H r+H   
    KIAA1954   385    YECID-CGKAFSQSsSLIQHERTH    407  

SM00355: domain 12 of 13, from 413 to 435: score 27.9, E = 0.0014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f+ k++L  H+r+H   
    KIAA1954   413    YECNE-CGRAFRKKtNLHDHQRIH    435  

SM00355: domain 13 of 13, from 441 to 463: score 30.0, E = 0.00033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk fs+ +aL++H+r+H   
    KIAA1954   441    YSCKE-CGKNFSRSsALTKHQRIH    463  

//