hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17293614/chunk_1/iprscan-20080502-17293614.nocrc
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Query sequence: KIAA1953
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00327                                                 100.8    1.6e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00327    1/1     175   358 ..     1   193 []   100.8  1.6e-25

Alignments of top-scoring domains:
SM00327: domain 1 of 1, from 175 to 358: score 100.8, E = 1.6e-25
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld.gdrvglvqFssd
                      p++vvf+lD+S+Sm g ++ ++k+++ +++ +l++ dr+++++Fs++
    KIAA1953   175    PKNVVFVLDSSASMVGTKLRQTKDALfTILHDLRpQDRFSIIGFSNR 221  

                   vrvefpln....sqskdallealaslsykglkdyslgggTnlg.ALqyal
                    +v+ +   + +  s  + +  ++ +s+        +ggT++++ALq+a+
    KIAA1953   222 IKVWKDHLisvtPDSIRDGKVYIHHMSP--------TGGTDINgALQRAI 263  

                   enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak
                   + l++  a++ +g+       ++  +++++TDG+++ g++    il   +
    KIAA1953   264 RLLNKYVAHsGIGD-------RSVSLIVFLTDGKPTVGETHTLKILNNTR 306  

                   elkrsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslld
                   e+ r  v +f+ig+gn+ d++ l++++ e+ g+        v + +++  
    KIAA1953   307 EAARGQVCIFTIGIGNDvDFrLLEKLSLENcGL-----TRRVHEEEDAGS 351  

                   llidlll<-*
                    li +     
    KIAA1953   352 QLIGFYD    358  

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