hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17293614/chunk_1/iprscan-20080502-17293614.nocrc
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Query sequence: KIAA1953
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00092.18.fs von Willebrand factor type A domain             81.9    1.2e-25   1
PF00092.18.ls von Willebrand factor type A domain             83.9    4.6e-22   1
PF06668.2.fs Inter-alpha-trypsin inhibitor heavy chain C-    65.0    8.5e-19   2
PF06668.2.ls Inter-alpha-trypsin inhibitor heavy chain C-    58.0    2.8e-14   1
PF08487.1.fs Vault protein inter-alpha-trypsin               36.0    1.6e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08487.1.fs   1/1       6    43 ..    79   119 .]    36.0  1.6e-08
PF00092.18.fs   1/1     177   360 ..     1   195 []    81.9  1.2e-25
PF00092.18.ls   1/1     177   360 ..     1   195 []    83.9  4.6e-22
PF06668.2.ls   1/1     597   791 ..     1   191 []    58.0  2.8e-14
PF06668.2.fs   1/2     597   727 ..     1   133 [.    60.5  1.7e-17

Alignments of top-scoring domains:
PF08487.1.fs: domain 1 of 1, from 6 to 43: score 36.0, E = 1.6e-08
                   *->varGksAgLVrtsgrdmEqFtvsVanVapnsKVtFeLtYeE<-*
                      ++r+k+++ ++++g ++  F++s  ++++++K++F+L+YeE   
    KIAA1953     6    EKRNKTTEENGEKGTEI--FRASA-VIPSKDKAAFFLSYEE    43   

PF00092.18.fs: domain 1 of 1, from 177 to 360: score 81.9, E = 1.2e-25
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                      ++vF+lD+S S+ + + +++ kd++ +++     +++ ++r++++ +
    KIAA1953   177    NVVFVLDSSASMVGTK-LRQTKDALFTILH----DLRPQDRFSIIGF 218  

                   ssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyalenlf
                   s++ +++ +   + + d++ +        +++GgT+ ++ AL+ a+++l+
    KIAA1953   219 SNRIKVWKDHLISVTPDSIRDGKvYIHHMSPTGGTD-INGALQRAIRLLN 267  

                   sstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkg
                   +         a s ++++ + ++++lTDGk++ g+    ++++  +++ +
    KIAA1953   268 KY-------VAHSGIgDRSVSLIVFLTDGKPTVGETHTlKILNNTREAAR 310  

                   vgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqe
                     + +f +G+G+dvd   L++++   ++ g   +v +++++  ql  +++
    KIAA1953   311 GQVCIFTIGIGNDVDFRLLEkLS--LENCGLTRRVHEEEDAGSQLIGFYD 358  

                   ql<-*
                   ++   
    KIAA1953   359 EI    360  

PF00092.18.ls: domain 1 of 1, from 177 to 360: score 83.9, E = 4.6e-22
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                      ++vF+lD+S S+ + + +++ kd++ +++     +++ ++r++++ +
    KIAA1953   177    NVVFVLDSSASMVGTK-LRQTKDALFTILH----DLRPQDRFSIIGF 218  

                   ssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyalenlf
                   s++ +++ +   + + d++ +        +++GgT+ ++ AL+ a+++l+
    KIAA1953   219 SNRIKVWKDHLISVTPDSIRDGKvYIHHMSPTGGTD-INGALQRAIRLLN 267  

                   sstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkg
                   +         a s ++++ + ++++lTDGk++ g+    ++++  +++ +
    KIAA1953   268 KY-------VAHSGIgDRSVSLIVFLTDGKPTVGETHTlKILNNTREAAR 310  

                   vgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqe
                     + +f +G+G+dvd   L++++   ++ g   +v +++++  ql  +++
    KIAA1953   311 GQVCIFTIGIGNDVDFRLLEkLS--LENCGLTRRVHEEEDAGSQLIGFYD 358  

                   ql<-*
                   ++   
    KIAA1953   359 EI    360  

PF06668.2.ls: domain 1 of 1, from 597 to 791: score 58.0, E = 2.8e-14
                   *->eqGieVnGqligeKrarkkkkegKlstyFgklgvtfkkpd.lqvevt
                      ++G++VnG lig+ +a +++++ K +ty  ++ + + kp++  +e+t
    KIAA1953   597    DSGVTVNGELIGA-PAPPNGHK-KQRTYLRTITILINKPErSYLEIT 641  

                   pEtItltrgrrssvysWkdtlfvvlpGlkmtidkeklLvvslpdevtfsv
                   p ++ l  g    v+    +++v   Gl +++    +++v+ +  + f++
    KIAA1953   642 PSRVILDGGD-RLVLPCNQSVVVGSWGLEVSVSANANVTVTIQGSIAFVI 690  

                   LlhrVWKkhpvpqdfLglylpDtdrFSarvhGlLGQFy.qevdfevfdir
                   L h   K  p  +  Lg+y+  +  +S++ hGlLGQF +q+   ++  + 
    KIAA1953   691 LIHLYKKPAPFQRHHLGFYIANSEGLSSNCHGLLGQFLnQDA--RLT-ED 737  

                   P.GsDPtK...........PdatmeVkghdltVTRglqkDYrqDgvpGte
                   P G     +++   + +++P+a ++Vkgh+ +V    +k Y      G e
    KIAA1953   738 PaGPSQNLthplllqvgegPEAVLTVKGHQVPVVWKQRKIY-----NGEE 782  

                   .vsCWfVhn<-*
                   ++ CWf  n   
    KIAA1953   783 qIDCWFARN    791  

PF06668.2.fs: domain 1 of 2, from 597 to 727: score 60.5, E = 1.7e-17
                   *->eqGieVnGqligeKrarkkkkegKlstyFgklgvtfkkpd.lqvevt
                      ++G++VnG lig+ +a +++++ K +ty  ++ + + kp++  +e+t
    KIAA1953   597    DSGVTVNGELIGA-PAPPNGHK-KQRTYLRTITILINKPErSYLEIT 641  

                   pEtItltrgrrssvysWkdtlfvvlpGlkmtidkeklLvvslpdevtfsv
                   p ++ l  g    v+    +++v   Gl +++    +++v+ +  + f++
    KIAA1953   642 PSRVILDGGD-RLVLPCNQSVVVGSWGLEVSVSANANVTVTIQGSIAFVI 690  

                   LlhrVWKkhpvpqdfLglylpDtdrFSarvhGlLGQF<-*
                   L h   K  p  +  Lg+y+  +  +S++ hGlLGQF   
    KIAA1953   691 LIHLYKKPAPFQRHHLGFYIANSEGLSSNCHGLLGQF    727  

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