hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17211905/chunk_1/iprscan-20080502-17211905.nocrc
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Query sequence: KIAA1948
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 322.2    3.6e-92  13

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/13    125   147 ..     1    23 []    24.3    0.017
SM00355      2/13    153   175 ..     1    23 []    27.4   0.0019
SM00355      3/13    181   203 ..     1    23 []    23.3    0.033
SM00355      4/13    209   231 ..     1    23 []    29.9  0.00036
SM00355      5/13    237   257 ..     1    23 []    15.7      5.4
SM00355      6/13    265   287 ..     1    23 []    20.0     0.34
SM00355      7/13    293   315 ..     1    23 []    29.1  0.00062
SM00355      8/13    321   343 ..     1    23 []    25.9   0.0056
SM00355      9/13    349   371 ..     1    23 []    26.0   0.0051
SM00355     10/13    377   399 ..     1    23 []    24.8    0.012
SM00355     11/13    405   427 ..     1    23 []    26.4   0.0041
SM00355     12/13    433   455 ..     1    23 []    25.6   0.0069
SM00355     13/13    461   483 ..     1    23 []    23.8    0.023

Alignments of top-scoring domains:
SM00355: domain 1 of 13, from 125 to 147: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H r+H   
    KIAA1948   125    YECKE-CGKAFRVRqQLTFHHRIH    147  

SM00355: domain 2 of 13, from 153 to 175: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f++  +L+rH+r H   
    KIAA1948   153    YECKE-CGMAFRQTaHLTRHQRLH    175  

SM00355: domain 3 of 13, from 181 to 203: score 23.3, E = 0.033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f    +L+ H+++H   
    KIAA1948   181    YECKE-CGEAFICGaDLRVHQKMH    203  

SM00355: domain 4 of 13, from 209 to 231: score 29.9, E = 0.00036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H+r+H   
    KIAA1948   209    YECKE-CGKAFRVRgQLTLHQRIH    231  

SM00355: domain 5 of 13, from 237 to 257: score 15.7, E = 5.4
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+++ +L+rH++     
    KIAA1948   237    YVCKE-CGKAFRQYaHLTRHQK--    257  

SM00355: domain 6 of 13, from 265 to 287: score 20.0, E = 0.34
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f   + L+ H + H   
    KIAA1948   265    YECKE-CGKAFLCGsGLRVHHKLH    287  

SM00355: domain 7 of 13, from 293 to 315: score 29.1, E = 0.00062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H+r+H   
    KIAA1948   293    YECKE-CGKAFRVRqQLTLHQRIH    315  

SM00355: domain 8 of 13, from 321 to 343: score 25.9, E = 0.0056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+  +L+ H r+H   
    KIAA1948   321    YECKE-CGKTFSRGyHLILHHRIH    343  

SM00355: domain 9 of 13, from 349 to 371: score 26.0, E = 0.0051
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k fs++++L+ H+ +H   
    KIAA1948   349    YECKE-CWKAFSRYsQLISHQSIH    371  

SM00355: domain 10 of 13, from 377 to 399: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+  ++L++H+ +H   
    KIAA1948   377    YDCKE-CGKAFRLLsQLTQHQSIH    399  

SM00355: domain 11 of 13, from 405 to 427: score 26.4, E = 0.0041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f+ ++ L+ H+ +H   
    KIAA1948   405    YKCKE-CGKAFRLRqKLTLHQSIH    427  

SM00355: domain 12 of 13, from 433 to 455: score 25.6, E = 0.0069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C k f+  ++L++H+r+H   
    KIAA1948   433    FECKE-CRKAFRLNsSLIQHLRIH    455  

SM00355: domain 13 of 13, from 461 to 483: score 23.8, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f+++++L++H+++H   
    KIAA1948   461    YECKE-CKKAFRQHsHLTHHLKIH    483  

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